D1.3 Mutation and gene editing Flashcards

1
Q

what is a gene mutation

A

a change in the sequence of bases of a particular gene

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2
Q

when can gene mutations occur

A

they are more likely to occur at certain times in the cell cycle than other times
such as when DNA polymerase fails to proofread errors during replication

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3
Q

what are factors that can change the sequence of bases in DNA

A

ionising radiation
UV
Chemicals

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4
Q

what is a point mutation

A

a change in one base in the gene sequence
can change the amino acid being coded by the gene

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5
Q

what is substitution mutation

A

change of one base to a different base copied by incorrect copying of DNAw

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6
Q

what is insertion mutation

A

additional base/s are added to the DNA

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7
Q

What is deletion mutation

A

removal of a base/s from DNA

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8
Q

what are frameshift mutations

A

mutations in DNA where the number of nucleotides removed or inserted arent in a multiple of 3, leading to every codon afterwards to be read incorrectly during translation
happens due to deletions/insertions

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9
Q

what are nonsense mutations

A

codes for a stop codon meaning the rest of the code isn’t read

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10
Q

what is missense mutation

A

results in a different amino acid being coded for

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11
Q

what is a sense mutation

A

when the mutation has no effect due to degeneracy of the genetic code

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12
Q

what happens if the substitution occurs in a non coding region

A

the mutation may have a neutral effect on the proteome of the cell

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13
Q

what are single nucleotide polymorphisms

A

they are the result of base substitution mutations

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14
Q

what is the result of mutations

A

they increase the likelihoods of polypeptides not functioning properly

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15
Q

what is an example of an insertion mutation

A

Huntingtons disease

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16
Q

Explain Huntington’s disease

A

Insertions can result in repeating base sequences of three nucleotides, which lead to abnormal number of triplet repeat sequences
In huntington’s there is an abnormality in the HTT gene
A DNA segment (CAG trinucleotide repeat) is repeated multiple times in a row (10-35)
mutation leads to a higher number of these causing degenerative effects

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17
Q

what is the result of Huntington’s disease

A

neurodegenerative disease
progressive mental deterioration
involuntary muscle movements

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18
Q

Explain the delta 32 mutation in relation to HIV

A

the delta 32 mutation is a deletion mutation which prevents the production of CCR5 protein which is a receptor. Without this receptor, HIV finds it harder to bind to the cell and enter
people who have two copies of the mutation are less susceptible to infection

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19
Q

what is a mutagen

A

a factor capable of causing a mutation

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20
Q

explain ionising radiation as a mutagen

A

X rays and radiation can damage ions inside the nucleus leading to breakup of DNA

21
Q

explain non ionising radiation as a mutagen

A

UV light
less penetrating but if absorbed, can cause adjacent bases on DNA strand to bind to each other instead of opposite base

22
Q

explain bacterial infection as a mutagen

A

specific bacterial infections can trigger cancers

23
Q

explain chemicals as a mutagen

A

can be carcinogenic. prolonged exposure to chemicals can trigger cancer

24
Q

explain virus infection as a mutagen

A

specific infections that may trigger DNA mutations
some can insert part of the virus genome into the host and produce proteins that alter the cell cycle
leads to uncontrolled replication of cells

25
how is natural selection related to random mutation
is a process that selects features of favourable alleles that have been generated by random mutation
26
What is a transition substitution mutations
swaps between bases of similar shapes ( between purines or between pyrimidines) they are less likely to affect the protein and usually dont have any phenotypic effects
27
what is a transversion substitution mutation
swaps between a purine and a pyrimidine base
28
what are possible reasons for 'hot spots' in mutations
variations in the superstructure of DNA Regions where accessory proteins are less common, leading to an increased localised error that exceeds the correct rate
29
what are germ line mutations
mutations occurring in ovaries or testes they give rise to mutated gametes resulting in inherited diseases
30
what happens to mutations in somatic cells
they are only passed to the immediate descendant of that cell, and disappear when organisms die
31
are mutations in somatic cells inheritable
they are not but they may lead to cancer
32
how do changes in environment affect mutation and evolution
some individuals in a population may have a selective advantage with increased chance of survival, ultimately lead to changes in the gene pool of a species
33
what is gene knockout
it produces an organism with one non-functional gene, allowing researchers to investigate the function of that gene
34
what are examples of model organisms
mice, bacteria, plants
35
what makes the use of model organisms possible
universality of the genetic code and commonality of basic biological process performed by almost all living organisms allows prediction of similar effects
36
how do prokaryotes defend themselves against infection
their response is based on a region of DNA sequences called CRISPR
37
what is CRISPR
Clustered regularly interspaced short palindromic repeats sequences in the genome of some prokaryotes that act as a genomic record of a previous viral attack
38
what works alongside CRISPR
the Cas9 enzyme are bacterial endonuclease that form a double strand break in DNA at a specific target site within a larger recognition sequence With both, bacteria uses the sequences to recognize and deactivate future invading viruses
39
what are the steps of CRISPR and Cas9
after bacteria is infected, CRISPR system used to cut up the invading viral DNA and insert pieces of it into their own genome as a memory Bacteria transcribe the spacers into RNA, forming a complex with the Cas9 enzyme. They monitor the cell for any DNA sequence complementary to the RNA. When complementary DNA sequence is located, the Cas9 enzyme is activated If matching DNA is encountered, the complex binds and cuts the viral DNA at specific locations to prevent it from replicating
40
what have scientists been able to do with CRISPR and Cas9
develop precise genome editing technology
41
Why is CRISPR so useful
due to its precision, there are many opportunities to modify any gene on interest with a reduced risk of accidentally affecting other genes can be used to edit out gene defects
42
how can CRISPR be used to treat gene defects
by removing diseased cells, fix them using CRISPR and then return them to patients to treat the gene condition
43
How can CIRSPR be used to treat sickle cell anaemia
by editing a gene from bone marrow so cells would produce a certain type of haemoglobin
44
what are conserved genetic sequences
they are identical or similar sequences in nucleic acids across species or a group of species they are a way of providing evidence about the structure and function of first life on earth
45
what are the hypotheses behind the mechanism for conserved sequences
functional requirement for the gene products slower rates of mutation than the background mutation rate
46
what shows lower mutation rates than less expressed genes
highly transcribed genes
47
what can the impact of gene expression on mutation rate may be due to
enhanced proofreading and repair mechanisms for the section of DNA
48
where are highly conserved sequences contained
in non coding regions