Exam 5: Lecture 4 Flashcards Preview

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Drosophila Body Plan

-established in early embryogenesis
-egg/oocyte can't initiate body plan formation and must rely on instructions sent from mother
-instructions for patterning the A/P axis are provided by subset of cells from maternal ovary
-many of these mRNAs are localized to specific regions of the embryo
-translated proteins will diffuse away from the source forming concentration gradients within the embryo
-differing levels of these TFs will activate expression of target genes in concentration dependent manner


Maternal Effect Genes

-tasked with subdividing embryo into large domains
-do so by activating "Gap" genes


Gap Genes

-expressed in large swathes of the embryo
-loss results in embryo that is missing anywhere from 25%-40% of tissues
-in turn directly control expression of "Pair Rule" genes


Pair Rule Genes

-expressed in seven stripes
-removal leads to loss of tissues in alternating segments


Segment Polarity

-embryo further subdivided by these genes
-act to determine identity of each of the fourteen different embryonic segments



-confer specific fates upon groups of segments
-Mutations lead to transformation of one segment into another
-ex: loss of Antennapedia leads to conversion of legs into antennae while overexpression of antenna will lead to its conversion into a leg


Drosophila Ovary

-female ovaries located within abdomen of adult fly
-each contains set of sixteen ovarioles
-most anterior tip contains germarium where germline stem cells are kept
-stem cells divide and produce cells which give rise to developing egg/oocyte
-14 distinct stages to development of each egg/oocyte
-at end of stage 14 egg/oocyte will first pass through the lateral oviduct, then through the common oviduct, and finally through uterus and vulva


Patterning of Egg/Oocyte

-while it's developing it is also being patterned in dorsal-ventral and anterior-posterior axes
-A/V patterning does not involve secretion of ligand
-gradients of mRNA and protein localization will be established in the early embryo
-ultimately leads to differential gene expression along A/P axis


Follicle Cells

-ensheath developing egg during development
-one cell gives rise to developing oocyte


Nurse Cells

-set of 15 cells that will lie adjacent to the anterior quadrant of the oocyte
-connected to each other via ring canals and also to the oocyte
-allows proteins and mRNA transcripts to be passed between nurse cells
-these cells deposit large quantities of mRNA transcripts and proteins into the developing egg/oocyte
-necessary to get development of embryo started prior to onset of zygotic transcription


mRNAs Made in Nurse Cells and Deposited in Egg/Oocyte

-said to be transcribed from maternal effect genes
-appropriate term because transcription of genes in parent has effect on next generation


Deposition of mRNAs and Proteins into Oocyte

-factors manufactured in adjacent nurse cells and are dumped into oocyte via ring canals
-3 key mRNA transcripts correspond to bicoid, oskar, and gurken genes
-these mRNAs are deposited into anterior pole of oocyte
-concentration gradient doesn't happen as one would expect


Bicoid mRNA Transcripts

-localized to anterior pole


Oskar mRNA Transcripts

-localized to posterior pole


Gurken mRNA Transcripts

-localized to anterior dorsal pole
-this localization is important for patterning the embryo in anterior-posterior axis


Localization of Bicoid, Oskar, and Gurken

-to discrete positions within developing oocyte is dependent upon activity of several motor proteins and a microtubule meshwork


Alpha and Beta Tubulin Subunits

-organized into polymers called microtubules
-each tubule has two polarized ends (+ and - ends)
-generally plus end oriented toward posterior of oocyte and minus oriented toward anterior pole


Transport of Cargo

-vesicles, proteins, and mRNA transcripts
-can be transported along microtubule in direction dependent manner
-this movement is dependent upon motor proteins dynein and kinesin



-moves cargo towards minus end of microtubule
-localization of bicoid mRNA transcripts tells you they're transported by this
-composed of several different subunits
-one subunit contains ATPase domain
-divided into two classes: cytoplasmic and axonemal



-moves cargo toward plus end of microtubules
-localization of oskar mRNA transcripts tells you they're transported by this
-comprised of several different subunits
-one subunit contains ATPase domain which allows it to generate movement via hydrolysis of ATP
-known to play roles in mitosis, meiosis, and transport of cargo
-division of these proteins into separate classes is based on overall structure and known biological functions


Cytoplasmic Dynein

-used to properly position organelles such as the nucleus and Golgi
-also used to transport vesicles, proteins, and mRNA transcripts


Axonemal Dyenins

-found in flagella and cilia
-used for movement of both structures


3' UTR of Bicoid

-contains regulatory element that is bound by members of dyein complex
-because dyenin walks cargo to minus end of microtubules the bicoid mRNA transcript will be transported and localized to anterior pole of oocyte (where minus poles are located)
-as kinesin walks cargo towards plus end of microtubules, oskar transcripts will be localized to posterior pole


Experiment: Generate Oskar With Bicoid 3' UTR

-if you generate oskar mRNA that contains bicoid 3' UTR and inject it into normal embryo, you will create embryo with two tail ends
-because endogenous oskar mRNA will be localized properly to posterior pole while mutant oskar that you created will now localize to anterior pole and transform that tissue into posterior tissue


Nanos mRNAs

-oskar transcripts not only ones localized to posterior pole after being deposited into anterior pole of oocyte
-these mRNAs behave in same manner
-also contain regulatory element within their 3' UTR that is bound by kinesin
-if you generate mutant nanos mRNA that contains bicoid 3' UTR and inject it into normal cell you will create embryo with two tails


Oskar and Nanos Experiments

-indicate that correct localization of these transcripts are critical for anterior-posterior patterning


Concentration Gradients

-maternal bicoid and nanos mRNA transcripts translate early in development of embryo
-Bicoid and nanos then diffuse creating classic concentration gradients
-highest levels of Bicoid found at anterior pole
-highest levels of nanos found at posterior pole
-decreasing amounts of proteins found towards center of embryo


Bicoid: TF

-roles in development: to activate expression of orthodenticle (otd) and hunchback (hb)



-otd expression restricted to regions of embryo with highest levels of bicoid
-due to presence of low affinity bicoid sites within embryonic enhancer



-hb expression expands into middle of embryo where there are intermediate levels of bicoid
-due to presence of both high and low affinity bicoid sites within the embryonic enhancer