Functions of Nucleic Acids Flashcards

(52 cards)

1
Q

What are the components of a nucleotide?

A

•A phosphate group
•A pentose sugar, either deoxyribose sugar or ribose sugar
•An organic nitrogenous base

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2
Q

What is the process of DNA replication?

A
  1. DNA unwinds
  2. Hydrogen bonds holding complementary base pairs break, catalysed by DNA helicase and the 2 strands separate.
  3. Each DNA strand acts as a template.
  4. Free DNA nucleotides align opposite their complementary bases.
  5. DNA polymerase catalyses the condensation reaction between 2 DNA nucleotides. This occurs from the 5 prime to the 3 prime end of the chain.
  6. Each new DNA molecule is made from one original template strand and one replicated strand. This is known as semi-conservative replication.
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3
Q

What are the three theories of how DNA may replicate?

A

-Conservative
-Semi-Conservative
Dispersive

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4
Q

What is conservative?

A

the parental double helix remains intact, completely conserved, and a whole new DNA molecule is made

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5
Q

What is semi conservative?

A

Each strand in the parental double helix acts as a template to synthesise a new polynucleotide strand.
Each new DNA molecule contains one template strand and one newly replicated strand

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6
Q

What is dispersive?

A

Each new DNA molecule contains fragments of the parental double helix and newly synthesises DNA

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7
Q

What is evidence for semi-conservative replication is provided by?

A

an experiment devised by Matthew Meselson and Franklin Stahl

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8
Q

why is e.coli used?

A

because it is easy to culture and the DNA is not contained within a nucleus (i.e. bound by a nuclear membrane).

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9
Q

What is the process of the experiment?

A
  1. E.coli was grown in a medium containing amino acids made with the heavy isotope 15N. The bacteria produced nucleotides containing 15N. All the bacteria’s DNA contained this heavy isotope. The DNA was extracted and the suspension then centrifuged.
  2. The bacteria were washed and then transferred to a medium containing amino acids with the lighter isotope - 14N - and allowed to divide once (one generation). The DNA was extracted and the suspension then centrifuged.
  3. The bacteria were allowed divide again (two generations) on the 14N medium. Again the DNA was centrifuged.
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10
Q

Explain why this was conclusive evidence of semi conservative replication rather than conservative or dispersive-

A

After one generation conservative replication would not give a band in the middle, only a band at the top (light) and at the bottom (heavy). Dispersive would only produce one band which got progressively higher in the tube, rather than two

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11
Q

What are the two stages of protein synthesis?

A

Transcription
Translation

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12
Q

What is transcription?

A

occurs in the nucleus. The genetic code for a specific protein is copied. A complementary strand of mRNA is formed from one template strand of DNA. mRNA leaves the nucleus via the nuclear pore and travels to the ribosome.

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13
Q

What is translation?

A

occurs at the ribosome. The genetic code is translated into a polypeptide.
Amino acids that correspond to the codons on the mRNA are brought to the ribosome by tRNA.
The amino acids are joined together at the ribosome to form the polypeptide chain.

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14
Q

What is the process of transcription?

A

Only one strand of DNA is used as a template strand for the transcription of mRNA.
The enzyme DNA helicase breaks the hydrogen bonds holding together the base pairs in a specific region of the DNA molecule and the two strands unwind.
The enzyme RNA polymerase binds to the template strand at the beginning of the sequence to be copied.
Free RNA nucleotides align opposite complementary bases on the template strand
RNA polymerase moves along the template strand, catalysing the addition of RNA nucleotides to each other until it reaches a stop codon. Behind the RNA polymerase, the DNA strands rewind.
mRNA leaves via a nuclear pore and travels into the cytoplasm.

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15
Q

In eukaryotes, what is the initial mRNA molecule produced by transcription compared with the final one?

A

initial mRNA molecule produced by transcription is longer than the final mRNA that is translated at the ribosome.

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16
Q

What is this initial version called?

A

pre-mRNA, which needs sequences of bases to be removed.

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17
Q

What are introns?

A

non-coding nucleotide sequences in DNA that are removed after transcription by the enzyme endonuclease.

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18
Q

What are exons?

A

are the coding sequences which are left behind and are spliced together by ligase enzymes to form the final mature mRNA.

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19
Q

What are the stages involved in the creation of mature mRNA?

A

-Transcription
-Introns removed using endonuclease enzymes
-Exons spliced together using ligase enzymes
-Exits via nuclear pore to the ribosome in the cytoplasm

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20
Q

Suggest how more than one polypeptide could be produced from one gene?

A

The exons could be spliced back together in a different order thus coding for a different sequence of amino acids, which would result in a different polypeptide

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21
Q

What happens in translation?

A

sequence of codons on the mRNA is translated into a sequence of amino acids to form a polypeptide.
This takes place on the ribosome and involves tRNA.

23
Q

What is the shape of tRNA?

A

clover leaf shape.

24
Q

What is the function of tRNA?

A

to carry specific amino acids to the ribosome.

25
What does the anti codon do?
determines which amino acid the tRNA molecule will carry.
26
what does tRNA attach to?
attaches to the amino acid in the cytoplasm. This process requires ATP and is called ‘amino acid activation’.
27
What is a ribosome made from and where can it be found?
A ribosome is made from protein and rRNA. A ribosome could be free in the cytoplasm or attached to the rough ER.
28
What does each ribosome consist of?
small subunit and a large subunit.
29
What do the subunits have?
-The large subunit has two attachment sites for tRNA molecules. -The smaller subunit binds to the mRNA.
30
What are the steps of translation?
Initiation Elongation Termination
31
What happens in initiation?
1. Ribosome attaches to a start codon on the mRNA. 2.The first tRNA binds to the first attachment site. The anti-codon on the tRNA joins to the complementary codon on the mRNA by hydrogen-bonds, forming a codon-anticodon complex.
32
What happens in elongation?
4. A ribosomal enzyme catalyses the formation of a peptide bond between the adjacent amino acids. 5.The first tRNA leaves Site 1 and returns to the cytoplasm 6.The ribosome moves down the mRNA one codon so that the second tRNA moves from Site 2 to Site 1 7.A new tRNA binds to Site 2.
33
What happens in termination?
8.Sequence repeats until a stop codon is reached. 9.The ribosome-mRNA-polypeptide complex separates.
34
What is a Polysome?
When several ribosomes move down one mRNA strand. Each ribosome produces a polypeptide so several are made at once
35
What does the ribosome act as in translation?
acts as a framework, holding the codon-anticodon complex together.
36
What does ribosomal enzyme do?
-catalyses the formation of a peptide bond. -Ribosome moves along mRNA one codon at a time
37
What do the sequences of codons in mRNA determine?
the sequence of amino acids.
38
What are amino acids?
primary structure of the polypeptide. This polypeptide can then be transported to the Golgi body in vesicles where it is further modified
39
how can an amino acid be folded further or chemically modified?
by combination with non-proteins such as: •Carbohydrate to make glycoproteins •Lipid to make lipoproteins •Phosphate to make phospho-proteins
40
What is the role of the Golgi in the production and release of an extracellular enzyme?
-Polypeptide travels in the lumen of the rough ER -Polypeptide travels in transport vesicle to Golgi apparatus -Polypeptide is packaged and modified
41
What does DNA do?
stores genetic information coded in the sequence of bases
42
What does the sequence of bases determine?
the sequence of amino acids that are joined together to form a polypeptide.
43
What do some proteins contain?
more than one polypeptide
44
What is a gene?
A section of DNA that codes for a specific polypeptide
45
What’s the one gene one polypeptide hypothesis?
Some proteins contain more than one polypeptide. A section of DNA that codes for a specific polypeptide is called a gene. This is called the one gene-one polypeptide hypothesis.
46
What do three bases do and what is this called?
each amino acid. This is called the triplet code.
47
Why are there more triplet codes than amino acids?
Each amino acid has more than one triplet code, the code is then called degenerate. Some triplet codes do not code for amino acids but are ‘stop codons’ and mark the end of translation.
48
What is the genetic code known as?
universal - the same triplet codes for the same amino acid in all living organisms.
49
What else is the genetic code?
non overlapping - each base in the sequence occurs in only one triplet.
50
What is splicing?
Joining together of DNA fragments by ligase enzymes
51
What is an endonuclase?
An enzyme which cuts DNA at a specific base sequence
52
What is ligase?
Splices Exons together to form mature mRNA