HC6- DSB repair visualization Flashcards

1
Q

size DNA double helix

A

2 nm

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2
Q

nucleosome core

A

8 histon molecules > tetramer of 2 H3 and 2 H4 with 2 H2A/H2B dimers

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3
Q

Histone H1

A

linker molecule

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4
Q

size nucleosome core

A

11 nm

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5
Q

size beads on a string

A

30 nm > 300 nm

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6
Q

fiber width

A

250 nm

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7
Q

chromosome size

A

1400 nm

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8
Q

DSBs caused by

A
  • ionizing radiation
  • UV light
  • metabolic processes
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9
Q

foci are formed by

A

most proteins involved in DNA repair

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10
Q

DNA repair proteins upon radiation

A

relocate to sites of DNA damage

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11
Q

DNA repair proteins

A

RNF168, 53BP1, MDC1

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12
Q

GFP

A

for visualization and quantification of DNA repair proteins

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13
Q

diffusion of DNA repair proteins

A

get to DSBs by chance

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14
Q

laser microirradiation (quantifying accumulations)

A

readout for repair activities

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15
Q

drawbacks laser microirradiation

A
  • dosage difficult to establish and control
  • mostly UV-type DNA lesions
  • large dosage concentrated in small area of the nucleus
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16
Q

ultra-soft X-ray irradiation microscope adavantages

A
  • precise dosage control
  • clinically relavent radiation
  • spatial control of radiation through slits
  • realtime imaging
17
Q

53BP1

A

decides which pathway of repair will happen

18
Q

RNF8 and RNF168 (bad timing)

A

asynchronous and uneven accumulation

19
Q

duration of accumulation at individual DSBs

A

variable

20
Q

histone acetylation status

A

affects chromatin organization

21
Q

addition of acetyl groups leads to

A

histone relaxation by histone acetyl transferases (HATs)

22
Q

removal of acetyl groups leads to

A

histon condensation by histone deacetylases (HDACs)

23
Q

histone acetylation affects accumulation initiation RNF168

A

complexity chromatin impacts accumulation kinetics

24
Q

alpha particle irradiation

A
  • accelerated helium ions > induces complex DNA lesions
  • linear tract of DSBs
25
Q

complexity of DSBs affects

A

speed of detection

26
Q

free radical involvement DSBs

A

by oxygen radicals formed through water radiolysis

27
Q

oxygen radicals

A

short-lived, extremely reactive

28
Q

DMSO

A

free-radical scavanger