LEC5-8: Signal Transduction Flashcards Preview

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Flashcards in LEC5-8: Signal Transduction Deck (79):
1

what is signal transduction

process by which cells receive & respond to cues from biological environment

essentialy for normal development, homeostatis 

if wrong/aberrations, get disease like: cancer, ID, developmental genetic aberration, psychiatric disease, diabetes 

target for most drugs = signal transduction

2

general categories of cell-cell signaling? how do they differ?

1) endocrine: cell produces hormone, it enters into circulation, travels long distance > target cell; i.e. pituitary-synthesized hormone

2) paracrine: signaling cell releases factor into local area; ddoesn't enter bloodstream; i.e. SHH 

3) neuronal: specialized paracrine signaling w/ neutrotransmitters

4) contact-dependent: action limited to cell adjacent, cells must be in contact to hit target cell 

5) autocrine: cell both makes signaling factor & responds to it; i.e. cancer cells

3

types of signaling factors?

proteins

peptides

amino acids/their derivatives

lipids

prescription drugs

drugs of abuse

4

what is the basic principle of cell-surface receptors?

high affinity btwn hydrophilic signal molecule & cell-surface receptor makes them bind 

causes signal trasnduction event w/in cell; just diffusion wouldn't work

5

describe process of FAST signaling

what does it cause?

extracellular signal molecule > cell-surface receptor protein > intracellular signaling pathway > altered protein function > altered cytoplasmic machinery > altered cell behavior 

< sec to mins 

occurs in CYTOPLASM only

 

6

describe process of SLOW signaling

what does it cause?

extracellular signal molecule > cell-surface receptor protein > nucleus > altered protein synthesis by changing transcriptional program > altered cytoplasmic machinery > altered cell behavior

SLOW: mins to hrs 

occurs in both CYTOPLASM and NUCLEUS

7

major classes of cell surface receptors?

1) G-protein coupled receptors (GPCRs)

2) Receptor tyrosine kinases (RTKs)

3) Cytokine receptors 

 

8

what transmits through GPCRs (what are the LIGANDS)?

neurotransmitters (epinephrine, serotonin, dopamine)

histamine

sensory stimuli (light, odorants)

many prescription drugs 

9

what is the structure of the GPCR?

how does it basically work?

protein w/ 7 transmembrane domains 

ligand binds the receptor extracellularly, causing conformational change in the receptor

change allows intracellular domain to interact w/ heterotrimeric G protein

10

what is the structure of the heterotrimeric G protein?

what is each subunit able to do?

has 3 subunits: alpha, beta, gamma 

beta-gamma are always found together 

alpha is able to bind GT & to hydrolyze bound GTP to GDP

alpha and gamma have post-translational fatty acid residue connected - can insert into inner surface of plasma membrane

11

describe activation pathway of the G protein

 

Q image thumb

1) heterotrimeric G protein is inactive when bound to GDP, all 3 subunits are interacting then 

 

2) ligand binds GPCR > receptor changes conformation to allow interaction w/ alpha subunit of G protein 

 

3) alpha subunit releases GDP, binds GTP

 

4) alpha subunit w/ GTP dissociates from beta-gamma subunit 

 

5) alpha-GTP and beta-gamma subunits now interact w/ downstream receptors

12

what causes alpha subunit of G protein to switch GDP for GTP when activating?

nucleotide exchange: 

[GTP] > [GDP] in cytoplasm

so, if GDP is expelled, GTP replaces it

13

describe the pathway for inactivation of the G protein

1) after activating its target protein, alpha subunit hydrolyzes GTP to GDP, with aid of an RGS, regulatory of G-protein signaling

 

2) GDP-bound alpha subunit is inactive 

 

3) inactive alpha subunit re-associates w/ beta-gamma subunit b/c GDP-alpha has affinity for beta-gamma subunit

 

14

what is RGS? what is its function?

membrane-bound regulatory of G protein signaling protein

increases GTP-ase activity of alpha subunit of heterotrimeric G-protein, allows it to inactivate and "reset" much faster 

aka helps alpha subunit hydrolyze GTP to GDP 

15

how many GPCRs are there, and how many different alpha/beta/gamma subunits?

1000 GPCRs, 25 alpha/beta/gamma subunits 

so many different GPCRs will work thru similar pathways to the subunits

16

what are small or secondary messengers?

 

Q image thumb

a non-protein/enzyme intermediate molecule that acts as an intermediate to propagate a signal from a receptor

 

i.e. adenylyl cyclase, cAMP, IP3, DAG, Ca

17

what are the 3 classes of G-protein's alpha subunits, what do they directly do? 

Gs: activates adenylyl cyclase

GI: inactivates adenylyl cyclase 

Gq: activates phospholipase C 

18

describe the pathway of GS on its downstream targets

 

Q image thumb

1) activated G-alpha-S activates adenylyl cyclase

2) adenylyl cyclase converts ATP to cAMP 

3) cAMP activates targets, like PKA

4) cAMP binding to PKA activates it by dissociating its regulatory subunits 

5) PKA phosphorylates targets, i.e. glycogen phosphorylase & glycogen synthase 

 

19

what is a kinase? what is a protein kinase?

kinase: enzyme that phosphorylates, usually from ATP to a substrate

protein kinase: enzyme in which substrate is a protein

20

what are the 2 major types of protein kinases?

1) kinases that phosphorylate Ser/Thr residues

2) kinases that phosthorylate Tyr residues

21

what is the structure of PKA? 

how is it activated? 

PKA has 4 subunits: 2 regulatory, 2 catalytic

when cAMP binds to the 2 regulatory subunits, they no longer have affinity for catalytic subunits

catalytic subunits go forward & phosphorylate substrates, propagate signal

 

A image thumb
22

describe pathway involving adrenaline and GS

what is the result? and what kind of response is this?

 

Q image thumb

1) situation of fight/flight, adrenaline binds GPCR, activates GS

2) GS binds & activates adenylyl cyclase

3) adenylyl cyclase converts ATP to cAMP 

4) cAMP activates PKA 

5) PKA phosphorylates & activates phosphorylase kinase 

6) phosphorylase kinase phosphorylates phosphorylate glycogen by hydrolyzing ATP to ADP

7) phosphorylated phosphorylate glycogen causes glycogen breakdown

this gives your muscles energy to run! 

FAST signaling!

 

A image thumb
23

what steps in the GS/adrenaline pathway are sites of amplification? which are not sites of amplification?

Amplification sites (>1:1 ratio of activator>activated):

adenylyl cyclase activates cAMP

PKA phosphorylates substrates

 

Not amplification sites (1:1 ratio of activator>activated)

GS activates adenylyl cyclase

cAMP activates PKA

24

what is meant by a site of amplification?

signaling such that limited amount of information input causes explosive burst of information output

25

what is signal branching? example?

when 1 receptor protein can activate more than 1 kind of G protein

i.e. PKA has numerous substrates

26

why are signal transduction pathways reversible? what are examples of this?

because if signaling goes awry, that can result in disease

1) alpha subunit + RGS cause GTP hydrolysis to GDP

2) cAMP phosphodiesterase digests cAMP to AMP, which is a biologically inert signaling molecule 

3) protein phosphotases inactivate substrates that require phosphate for activation

 

27

describe the phospholipase C / Gpathway

 

Q image thumb

1) signal molecule activates its GPCR 

2) Gq subunit of G protein binds & activates phospholipase C-beta

3) phospholipase C breaks down the membrane phospholipid PIP2 into IP3 and DAG 

4) IP3 can activate release of Ca2+ inside the cell, which activates PKC, which causes other signaling functions 

DAG directly activates PKC also

 

28

what are IP3 and DAG examples of?

secondary messengers! 

from the phospholipase C pathway

29

what is the function of Gi?

inhibits adenylyl cyclase

30

describe activation and pathway of Gt

1) rhodopsin receptor activates Gt

2) Gt activates cGMP phosphodiesterase

3) cGMP phosphodiesterase breaks down cGMP

31

describe pathway of cholera toxin

1) cholera toxin is an enzyme. it ADP-ribosylates GS-alpha

2) ADP-ribosylated Gcannot hydrolyze GTP to GDP now

3) Gw/ GTP thus remains permanently activated, keeps activating adenylyl cyclase 

4) activated adenylyl cyclase increases cAMP levels, activates PKA

5) prolonged PKA activation in intestinal epithelium causes efflux of Cl- and water into gut 

causes copious, watery diarrhea 

32

describe pathway of pertussis toxin

1) pertussis toxin ADP-ribosylates alpha-subnit of Gi

2) prevents Gi from binding to GPCRs

this inhibits the inhibitor

3) leads to increased [cAMP]

causes bacteria colonization, leads to whooping cough

33

what are 3 ways in which the GPCR to PKA can be shut down?

1) Gi activation, as it inhibits adenylyl cyclase, which activates cAMP which activates PKA 

2) Block Gs from activating adenylyl cyclase

3) Block cAMP, as that is what adenylyl cyclase activates, and cAMP then activates PKA

34

what is the generalized structure of an enzyme-coupled receptor?

- receptor with extracellular ligand-binding, membrane-spanning, and intracellular regions 

- receptors are dimerized (brought together) by ligand binding

- receptors may be homodimers (same protein) or heterodimers (different proteins) 

enzyme activity may be intrinsic to receptor, or intracellular region may bind to receptor non-covalently

35

what is the largest family of enzyme-coupled receptors? 

what is its structure?

receptor tyrosine kinases

extracellular: ligand-binding domain

single membrane spanning region

intracellular: tyrosine-kinase domain

36

ligands of receptor tyrosine kinases (RTKs)?

platelet-derived growth factor

epidermal growth factor

fibroblast growth factor

insulin

 

37

describe signal transuction for receptor tyrosine kinases (RTKs)

RTKs exist as very weakly inactive in plasma membrane 

1) ligand binds RTK

RTK dimerizes 

2) dimerization causes receptors to be phosphorylated (auto or trans)

1st: phosphorylation of tyrosine-kinase domain

2nd: phosphorylation outside of tyrosine-kinase domain

receptors are now active

3) phosphates provide binding sites for next factors in signal cascade, and activates receptor's catalytic function

38

what are the classic domains of RTK signaling?

what does each bind?

SH2: binds phosphotyrosine regions

SH3: binds polyproline regions

specific factors' SH2 or SH3 domains bind to phosphate of specific Tyr residues

39

what are examples of modular enzymes? 

what's their function?

modular enzymes: contain SH2 and SH3 domains + an enzymatic component

PLC-gamma: binds to RTKs

PLC-beta: binds GQ of G-protein alpha subunit

40

what are modular adaptor proteins? their function?

modular signaling protein with SH2 and SH3 domains but NO ENZYMATIC activity 

i.e. Grb2

41

what is Ras? 

when is it active/inactive? 

how does it switch from active to inactive state?

Ras: s small G-protein which can bind GTP and GDP, has GTPase activity 

when GTP-bound: active; GDP-bound: inactive 

when signal enters, GEF (guanine nucleotide exchange factor) converts GDP to GTP, which turns Ras ON

Ras needs a GAP (GTPase activating factor) to hydrolyze GTP to GDP, turns Ras OFF 

 

 

 

42

describe how the MAP kinase cascade becomes activated via Ras

1) prior to signaling, Grb and SOS are bound 

2) when RTK activated by a ligand, generates a phosphotyrosine residue

3) Grb2 recognizes this residue, and Grb2 activates 

4) Grb2 recruits SOS

5) SOS causes Ras nucleotide exchange of GDP for GTP 

Ras becomes activated

 

 

43

what activates the MAP cascade?

Ras

44

describe the MAP kinase cascade

growth factor binds from extracellular space

1) when RTK is phosphorylated, Grb2 binds to it via SH2 domain (phospho-tyrosine binding) 

SOS is constituitively bound to Grb2 via its SH3 domain (which recognizes proline-rich area of Grb2)

2) SOS activates Ras 

3) Ras activates Raf (MAPKKK)

4) Raf phosphorylates MEK (MAPKK)

5) MEK phosphorylates ERK (MAPK)

causes changes in protein activity and changes in gene expression

45

what is the relationship between factors of the MAP pathway and cancer?

MAP is a major pathway that's deregulated in cancer

RTK may be multiplied or amplified

Ras is activated by point mutations, most commonly mutated oncogen in cancers

Raf sometimes also activated- esp in melanomas

46

what is herceptin?

breast cancer drug

is antibody against a specific RTK that's innappropriately active in breast cancer, so interferes w/ MAP pathway 

 

47

describe the PI-3 kinase pathway

1) PI-3K is a complex of a regulatory subunit, p85, and catalytic subunit, p110 

2) p85 has SH2 domain that binds activated RTKs, allows access of p110 to PIP and PIP2

3) PI-3k phosphorylates PIP and PIP2 on 3-position of inositol ring (= PIP3) 

4) PIP3 activate Akt, a ser/thr kinase

5) activated Akt phosphorylates substrates that promote cell survival & inhibit apoptosis

 

48

what is PTEN's function?

tumor suppressor gene 

removes phosphate from 3-position of phosphoinotides (PI3)

if mutated, the PI-3K pathway will not be turned off, and cell survival continues > tumors 

49

what are common causes of human cancer caused by mutations in RTK pathways?

1) mutations in RTKs, mutations in Ras, muations in BRaf (a type of Raf) drive pathway activation in absence of growth factors 

2) mutations leading to constitutive activation of PI-3K pathway, b/c promotes cell survival

50

what are some similarities & differences between GPCRs and RTKs?

BOTH: interact thru phospholipase C

only GPCRs: turn on adenylyl cyclase 

only RTKs: turn on MAP kinase, Akt kinase pathways

51

what are ligands of cytokine receptors?

prolactin, growth hormone, interferons, erythropoietin

52

what is similar/different btwn RTKs and Cytokine Receptors?

RTK: single polypeptide

BOTH RTK and Cytokine extracellular portion: amino terminus, binds ligands

RTK intracellular portion: carboxy terminus, intrinsic tyrosine kinase activity

Cytokine receptor intracellular portion: carboxy terminus, DOES NOT have intrinsic tyroskin kinase activity, or any other catalytic activity; non-covalently binds non-receptor tyrosine kinase that has intrinsic tyrosine kinase activity, JAK proteins

53

what are JAK proteins?

non-receptor tyrosine kinases associated w/ the intracellular portion of cytokine receptors

when complexes with cytokine receptor, allows cytokine receptor to behave like RTKs in that they undergo ligand-induced dimerization 

54

describe the cytokine receptors/JAK protein complexes signal pathway

1) prolactin/interferons/growth hormone binds cytokine receptor/JAK complex extracellularly

2) cytokine receptor/JAK complex undergoes dimerization, cross-phosphorylation, activation of JAK proteins 

3) JAK proteins phosphorylate intracellular portion of cytokine receptor 

4) SH2-containg proteins bind to cytokine receptor 

55

what proteins bind to activated cytokine receptor?

what does binding cause? describe pathway 

SH2-containing proteins: STAT (signal transducer and activator of transcription), are transcription factors 

1) activated cytokine receptors phosphorylate STAT

2) receptors dimerize when pY of one STAT binds SH2 of its dimeric partner & vice versa 

3) dimerized STATs translocate to nucleus, bind to DNA, activate gene expression 

56

what are the ligands of receptor serine/threonine kinases?

only ligands of the TGF (transforming growth factor)-beta/BMP (bone morphogenetic protein) family 

 

57

what is the structure of receptor serine/threonine kinases?

heterodimers 

Type I and Type II 

both are single-pass transmembrane proteins; have extracellular ligand binding domain, intracellular ser/thr kinase domain

58

function of TGFbeta/BMP proteins?

embryonic development, wound healing, disease-related fibrosis, cancer

59

describe the signal transduction pathway for TGFbeta/BMP on receptor tyrosine kinases

1) TGFbeta ligands induce Type I and II receptors to dimerize 

2) Type II receptors are constituitively active

Type II receptors phosphorylate Type I receptors

3) Type I receptor kinase activity activates 

Type I receptors phosphorylate SMAD factors

4) phosphorylated R-SMADs dimerize with co-SMADs (non-phosphorylated)

5) R-SMAD/co-SMAD dimer enters nucleus, induces expression of specific genes

60

how is the Notch signal activated?

when a Delta or Jagged-expressing cell comes into direct physical contact w/ a Notch-expresing cell 

example of contact-dependent signaling

61

what is unique about R-Smads?

they are a target for many kinases, so for other pathways beyond the TGF-beta/BMP signaling pathway

62

describe Notch pathway

1) Notch is bound by its ligand, Delta or Jagged

intracellular domain is proteolytically cleaved

2) Cleaved Notch intracellular domain (NICD) enters nucleus, interacts w/ DNA-binding factor, CSL 

CSL usually inhibits Notch pathway target genes' expression

3) CSL interaction w/ NICD makes it bind w/ transcriptional co-activators, turns on expression of notch-responsive target genes

signaling also decreases Delta expression - like on/off switch

63

what kind of interaction does notch signaling demonstrate?

1) lateral inhibition

2) note that no amplification occurs - so need NICD to go to nucleus to have transcription activation

64

what are Wnt ligands?

large family of secreted proteins that have a covalently attached fatty acid 

65

what is receptor for Wnt ligands?

describe structure of each

canonical complex of Frizzled & LRP5/6

Frizzled: 7 TM domains, bind Wnts via large extracellular N-terminus 

 

66

describe canonical Wnt signaling pathway without Wnt signal

If Wnt is inactive: 

B-cateninin undergoes proteolytic destruction by APC complex 

APC, axin, Ck1, GSK3-beta make up complex 

CK1 and GSK3-beta, ser/thr kinases, phosphorylate B-catenin, target it for proteolytic degradation by ubiquitin proteosome system 

in this state, in nucleus, TCF/LEF, DNA-binding factor, inhibits expression of Wnt pathway target genes 

67

describe the ways that Wnt signal pathway is maintained as off

when Wnt is off,

1) TCF/LEF complex binds to DNA in nucleus, inhibits txn factors from binding and expressing Wnt-related genes 

2) B-catenin undergoes constant degradation 

68

describe pathway of Wnt signaling in the presence of Wnt ligand

1) Wnt binds Frizzled-LRP5/6 receptor complex 

2) axin then binds to LRP5/6, disrupting the APC complex 

Dvl binds Frizzled, leads to inhibition of CK1 and GSK3-beta, they cannot phosphorylate B-catenin 

3) B-catenin thus no longer exists in phosphorylated state, is stabilized 

4) B-catenin migrates to nucleus, interacts w/ TCF/LEF and txn co-activators

activates expression of Wnt pathway target genes 

P3000 and CBP act as transcriptional co-activators for Wnt

69

what is B-catenin's function, outside of Wnt pathway?

cadherins:

B-catenin binds intracellular region of cell-cell adhesion molecules, tethers them to actin cytoskeleton, providng stability to cell-cell junctions

keeps epithelia of epithelial cells together

central area of B-cateinin protein is where binding occurs

70

what does Wnt pathway regulate re: disease?

1) important in embryonic development

2) regulates stem cells in homeostatic maintenance of adult tissues 

3) involved in cancer, esp colorectal cancer

71

describe how muations in Wnt pathway lead to polops in colon (familial adenomatous polyposis / adenomatous polyposis coli)

APC mutations means B-catenin is always produced, never degraded

pathway is locked ON 

stem cells over-proliferate, develop polops in epithelial lining of gut b/c it's constantly regenerating

thus APC = tumor suppressor gene, B-catenin=proto-oncogene

72

what is the structure of Hedgehog ligands (HH)?

full-length protein has N-terminal signaling domain, C-terminal auto-processing domain

C-terminal domain catalyzes proteolysis of itself into N- and C-terminal halves & simultaneously attaches a cholesterol molecuel to the new C-terminis of the N-terminal signaling domain 

signaling domain then has fatty acid molecule covalently added to its N-temrinus, results in mature, dually lipidated HH ligand 

73

what is primary HH receptor?

Ptch1, patched; 12 TM protein 

74

describe signal transduction of Hedgehog in absence of HH ligand

1) Ptch1 inhibits signaling activity of Smo, another plasma membrane protein 

2) If no Smo signaling, Gli, txn factor, is phosphorylated by PKA, CK1, GSK3-beta, Gli is thus proteolytically cleaved into GliR, repressor form 

3) GliR enters nucleus, inhibits HH pathway target gene expression

75

describe signal transduction of Hedgehog in presence of HH ligand

1) HH binds Ptch1, relieves Ptch1-mediated inhibition of Smo

2) Smo signals to prevent phosphorylation & proteolytic cleavage of Gli 

3) Full-length, activated Gli protein (GliA) enters nucleus, activates expression of HH pathway target genes 

76

what makes the Hedgehog pathway so unique? 

Ptch1 is actively inhibiting Smo without the binding of any ligand 

this is v different from GPCR or RTK pathways 

77

what is significant about relationship between the primary cilium and HH signaling?

primary cilium is microtubule-based organelle, present on almost all cell types

HH signaling requires the primary cilium, most components of HH pathway localize to the primary cilium: Ptch1 is found there, Gli proteolytic cleave to GliR occurs there 

In HH presence, Ptch1 exits the cilium, Smo enteres the cilium, Gli cleave stops, leading to GliA formation

78

what is Gorlin syndrome, what is its cause?

basal nevus syndrome 

mutations in Ptch1 result in Smo signlaling, leads to constituitive HH signaling

Causes Gorlin syndrome, which causes basal cell carcinoma of skin/medulloblastoma 

Ptch1 = tumor suppressor gene, then! 

79

what do mutations in Sonic hedgehog cause?

holonprosencephaly - birth defect include cyclopia or embryonic death 

cyclopamine, chemical that binds and inhibits Smo, involved

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