Lecture 1-5 Flashcards

1
Q

Defining characteristics of life (6).

A

1) exhibit order/pattern
2) process energy
3) respond to environment/stimuli
4) reproduce, grow, and develop
5) regulate internal conditions
6) adapt and evolve

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2
Q

What are the basics of evolution by natural selection?

A
  • individuals of a population vary in their traits
  • heritable traits are passed down from parents to offspring
  • a population produces more offspring than can survive
  • individuals with traits best suited for the current local environment will survive and reproduce
  • suitable traits will become more and more common in the population
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3
Q

Important statement regarding natural selection of living organisms and their various forms/functions.

A

Form fits function.

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4
Q

Name the 10 levels of biological organization (in order).

A

1) Biosphere
2) Ecosystem
3) Communities
4) Populations
5) Organisms
6) Organs and organ systems
7) Tissues
8) Cells
9) Organelles
10) Molecules

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5
Q

Why are organisms grouped from Domain to Species?

A

to show relatedness and similarities

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6
Q

Steps of hypothesis testing.

A

1) observation
2) hypothesis
3) prediction
4) experiment
* if result doesn’t match the original hypothesis, repeat!

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7
Q

Hypothesis vs theory?

A

hypothesis: a proposed explanation for a phenomenon
theory: a broad scope, supported by a large body of evidence that generates testable hypotheses

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8
Q

What are the indigenous people’s biological knowledge and how does it relate to biologists today?

A

1) botany for medicines and agriculture
2) zoology for hunting, fishing and aquaculture
3) ecology for interactions and interconnectedness among organisms

Biologists: observing, classifying, monitoring, etc

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9
Q

Describe the polarity of water.

A
  • covalent bond (sharing electrons)
  • oxygen is more electronegative than hydrogen
  • asymmetrical arrangement
  • oxygen has partial negative charge
  • there is cohesion between other water molecules (stick together)
  • hydrogen bonding between other water molecules
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10
Q

Why is cohesion of water important in plant biology?

A
  • walls of plant vessels have partial charges
  • water molecules are cohesive and adhere to these walls
  • stick, move up, stick, move up, stick (movement of water against gravity)
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11
Q

Why does hydrogen bonding of water molecules create surface tension?

A
  • water molecules have a higher attraction to each other than to air
  • creates a film
  • spider can walk on water
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12
Q

Describe the physical states of water.

A

liquid to ice:

  • temperature decreases
  • molecules slow down
  • h bonding is more ordered

liquid to gas (evaporation):

  • water has to absorb more heat than an equal amount of other liquids to change physical states
  • high energy water molecules move away from surface
  • hydrogen bonds broken
  • heat required
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13
Q

Why does ice float on liquid water?

A

ice is a solid with a larger volume and is less dense

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14
Q

What would happen to a lake in winter if liquid water was less dense than ice?

A
  • freeze, sink, freeze, sink until the whole lake is frozen from top to bottom
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15
Q

How does water act as a solvent?

A
  • each ion is surrounded by hydration shell (cation/anion)

- forms hydration shells around large polar molecules

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16
Q

What adaptations of animals in cold regions have been proven to lower the freezing point of their body fluids?

A

by increasing their solute concentrations

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17
Q

Which has a lower freezing point? Seawater or freshwater and why?

A

seawater due to the presence of a high solute concentration that lowers the freezing point of aqueous solutions

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18
Q

As pH lowers, [H+] ___ and [OH] ____ .

As pH increases, [H+] ___ and [OH] ___ .

A

increases, decreases

decreases, increases

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19
Q

If there is a pH unit change of 1, how much does this increase? A 2 pH unit change?

A

10 fold

10^2 = 100 fold

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20
Q

Identify the properties of the pH scale.

A

0-7 is acidic
*donates a proton to solution, increasing H+ concentration of solution
7-14 is basic
*accepts a proton from solution, decreasing H+ concentration of solution

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21
Q

Explain the effects of acidification of biological systems.

A
  • decrease in pH = increased [H+]

- H+ reacts with carbonate (component in shells of aquatic organisms), decreasing ability to make shells

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22
Q

Explain the role of buffers.

A
  • minimize changes in concentrations of H+ and OH- in a solution
  • consists of an acid-base pair that reversibly combines with H+
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23
Q

How does mammal blood buffering (natural buffering) work?

A
H2CO3 ----- (HCO3-) + (H+)
-when H+ produced, pH decreases 
(HCO3-) + (H+) ----- H2CO3
-reaction occurs and removes excess H+
- when H+ is used, pH increases
H2CO3 ----- (HCO3-) + (H+)
-adds H+ back, pH is restored
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24
Q

Describe the hydrocarbons.

A
  • has only carbon and hydrogen

- stored and oxidized later to release energy

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25
Name the functional groups that are reactive and non reactive.
reactive: hydroxyl, carbonyl, carboxyl, amino, phosphate, sulfhydryl non-reactive: methyl
26
Name the functional groups that are hydrophilic and hydrophobic.
hydrophilic: hydroxyl, carbonyl, carboxyl, amino, phosphate hydrophobic: sulfhydryl, methyl
27
Describe the functional group of hydroxyl.
--OH - alcohols - polar - hydrogen bonds
28
Describe the functional group of carbonyl.
--C=O \ - aldehydes: when terminal ketones: when not terminal - in sugar subunits (monosacharrides)
29
Describe the functional group of carboxyl.
--C=O \ OH - polar - can act as an acid (donate a proton) - hydroxyl+carbonyl
30
Describe the functional group of amino.
``` H / --N \ H ``` - amines - acts as a base (can pick up an H+) - also have carboxylic group
31
Describe the functional group of sulfhydryl.
--SH - thiols - cross link proteins (create dissulfied bridge) - polar - more hydrophilic
32
Describe the functional group of phosphate.
``` O || --O--P--(O-) | (O-) ``` -carry negative charge -reacts with water releasing energy -tends to undergo multiple chemical reactions -releases energy stored in ATP (adenosine triphosphate) -
33
Describe the functional group of methyl.
``` H | -- C -- H | H ``` - non polar - acts as a tag on DNA - important in gene expression
34
Name and explain the three types of isomers.
1) structural: different covalent arrangements of their atoms 2) geometric: same covalent arrangements, different spatial arrangements (cis and trans isomers) 3) enantiomers: mirror images of each other (but one may cause an effect and the other won't)
35
Cis vs trans isomers.
cis isomers: two Xs are on the same side; create kinks and bends in biological molecules trans isomers: two Xs are on opposite sides
36
Name 4 biological macromolecules.
1) proteins 2) nucleic acids 3) carbohydrates 4) lipids/fats
37
Name 3 biological macromolecules that are polymers.
1) proteins 2) nucleic acids 3) carbohydrates
38
Identify the functions of proteins (8).
1) assist chemical reactions (enzymes) 2) provide support 3) provide movement 4) store amino acids 5) coordinate organism's activities 6) protection against disease 7) transport substances 8) cell response to chemical stimuli
39
What is the structure of an amino acid?
- central carbon - carboxyl and amino functional groups - R group/side chain (gives variety in amino acids) - 20 different varieties of amino acids
40
Identifying acid or base of amino acids.
negative=acid | positive=base
41
Identifying polar or non polar amino acids.
non polar= methyl and hydrocarbon ring structures | polar= all other functional groups
42
How are polypeptides formed?
- requires energy input - assisted by ribosomes - has an amino and a carboxyl end/terminus (backbone) - backbone held together by peptide bonds formed via dehydration reactions - has side chains/ R groups
43
What physical interactions assist in the folding of proteins?
- aqueous environment | - non polar amino acids are shielded from water
44
State the trend that happens when you go down the levels of protein structure.
complexity increases as we go down the levels
45
Protein structure is affected by what four things? What effect does this have on the protein?
1) pH 2) solvent 3) solute concentration 4) temperature denaturation: loss of 3D structure and loss of function
46
What assists in the proper folding/refolding of proteins?
chaperonins
47
What are the biological roles of carbohydrates?
- fuel - carbon/energy storage - structural component
48
Which suffix helps identify a monosaccharide?
"ose"
49
How do monosaccharides vary?
- number of carbons in skeleton - position of carbonyl group - ring structures - enantiomers
50
Formation of glucose ring.
reaction between carbonyl of #1 carbon and hydroxyl of #5 carbon
51
Formation of ribose ring.
reaction between carbonyl of #1 carbon and hydroxyl of #4 carbon
52
Formation of fructose ring.
reaction between carbonyl of #2 carbon and hydroxyl of #5 carbon
53
How do the alpha and beta glucose differ from each other (ring isomers of monosaccharides)?
position of hydroxyl group on #1 carbon
54
What kind of bond is created during a polysaccharide polymerization?
glycosidic linkage
55
What are the functions of polysaccharides in both plants and animals, as well as which ones are involved?
1) structures and fibers - cellulose in plants; - chitin in arthropods and fungi 2) storage of surplus carbon and energy - starch in plants - glycogen in animals
56
Which is digestible by humans, starch or cellulose?
starch is digestible, cellulose is not | -this is due to humans not having the right enzymes able to break it down (cellulases)
57
What is the role of nucleic acids?
direct synthesis of proteins
58
Identify the structure of nucleotides.
- a nucleoside (nitrogenous base and pentose sugar) | - phosphate
59
Identify the pyrimidines and purines (nitrogenous bases) in both RNA and DNA.
pyrimidines (single ring) - cytosine (C) - thymine (T) in DNA - uracil (U) in RNA purines (double ring) - adenine (A) - guanine (G)
60
The DNA double helix is held together how?
hydrogen bonding