molecular building blocks Flashcards

1
Q

what are the main elements of life

A

hydrogen
oxygen
carbon
nitrogen
phosphorous

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2
Q

at what temperature is the maximum density of water

A

4 degrees celcius

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3
Q

what are the characteristics of living organisms (6)

A

made from one or more cells
capable of reproduction
respond to the environment
adapt and change
require a source of energy
growth & development

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4
Q

what are the levels of organisation of a chemical

A

atom –> molecule –> macromolecule

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5
Q

what is an atom

A

the simplest level of a chemical

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6
Q

what is a molecule

A

two or more atoms

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7
Q

what is a macromolecule

A

large, complex biologically important molecules inside cells made from simple molecules such as sugars, lipids and amino acids
most are polymers

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8
Q

what functions do macromolecules have

A

osmotic
structural
optical
enzymatic
and more

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9
Q

what are the structures of macromolecules like

A

very heterogenous - not from the same source
specific conformations are associated to definite functions

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10
Q

examples of macromolecules (5)

A

haemoglobin
DNA
glycogen
rhodopsin
collagen

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11
Q

what are organelles

A

aggregates of macromolecules used to carry out a specific function in the cell

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12
Q

examples of single cell life

A

bacteria
simple fungi
amoeba

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13
Q

what can multicellular organisms do (3)

A

specialise their cells
intercellular communiation
differentiation

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14
Q

what is the function of water

A

acts as a solvent
best at dissolving iconic and polar compounds

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15
Q

describe the polarity of water

A

the electron density is uneven
because of oxygen
so it has electronegativity

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16
Q

at what temperature range is water liquid

A

0 too 100 degrees celcius

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17
Q

describe the bonding in water

A

hydrogen bonding
electronegative atoms eg O or N can attract H atoms from other molecules
partial sharing of this proton leads to a mutual attraction between the two atoms
not a covalent bond
weak
important in protein and DNA structures and responsible for the unusual properties of water

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18
Q

what does water not interact with

A

non-polar substances
lipids
aromatic groups
hydrophobic compounds

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19
Q

what is the general formula for carbohydrates

A

Cn(H20)n

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20
Q

what are monosaccharides

A

chain of carbons, hydroxyl groups, one carbonyl group
eg glucose

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21
Q

what structure do monosaccharides exist as
and why

A

ring structures
because the aldehyde or ketone groups react with a hydroxyl group of the same molecule

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22
Q

what are amino sugars

A

they contain an amino (NH2) group
they are often acelyated
eg glucosamine

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23
Q

what are the 4 types of sugar derivatives

A

aminosugars
alcohol sugars
phosphorylated
sulphated

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24
Q

give an example of an alcohol sugar

25
what are phosphorylated sugars
they contain phosphate groups eg glucose 6 phosphate
26
what are sulphated sugars
they contain sulphate groups eg heparin, chondroitin sulphate they can absorb a large volume of water
27
how are glycosides formed
the hydroxyl group of a monosaccharide reacts with an OH or NH group to form a glycoside with a glycosidic bond
28
what are the 2 types of glycosidic bonds
O - glycosidic bonds N - glycosidic bonds
29
what do O glycosidic bonds form
disaccarides, oligosaccarides and polysaccarides
30
where are N glycosidic bonds formed
nucleotides and DNA
31
what are oligosaccharides
disaccharides that contain 2 monosaccharides joined by an O glycosidic bond they contain 3 - 12 monosaccharides they are products of digestion of polysaccharides or part of complex lipids/proteins
32
what are polysaccharides
they are formed by thousands of monosaccharides joined by glycosidic bonds eg starch & glycogen
33
what is the energy storage in plants
starch
34
what is the energy storage in animals
glycogen
35
what are proteogylcans
long unbranched polysaccharides radiating from a core protein
36
what makes up the ECM
proteoglycans and proteins such as collagen
37
what are fatty acids
lipids have a straight C chain (mostly 16-20) with a methyl group and a carboxyl group at the ends
38
what is the trend of the melting group in fatty acids
decreases with degree of unsaturation (fluidity)
39
what are 5 common unsaturated fatty acids
palmitoleic acid oleic acid linoleic acid linolenic acid arachidonic acid
40
what are unsaturated fatty acids
contain double bonds between carbon atoms
41
what are saturated fatty acids
contain no double bonds between carbon atoms
42
what are phosphoacylglycerols
they derive from phosphatidic acid they are formed from fatty acids esterified to glycerol and phosphorylated at C3
43
what are sphinogolipids
they derive from ceramide (serine, palmitic acid and another fatty acid)
44
what are eicosanoids
synthesised from fatty acids with 20 C with 3,4,5 double bonds they have major biological functions
45
what forms a nucleotide
nitrogenous base sugar phosphate
46
what are nitrogenous bases
they have N which can take up a sugar
47
what are examples of nucleotides (3)
nucleoside monophosphate (NMP) nucleoside diphosphate (NDP) nucleoside triphosphate (NTP)
48
what is the structure of an amino acid
carbon with carboxyl group amino group side chain with R groups
49
what determines the charge of an amino acid
it is determined by all 3 components it changes with the pH of the environment
50
what determines the polarity of an amino acid
the side chain determines polarity (hydrophilicity) or nonpolarity (hydrophobicity)
51
give 5 examples of amino acids
serine glutamic acid leucine tyrosine lysine
52
what is the dissociation of amino acids
at different pH carboxyl and amino groups are ionised (charged) some amino acids also have ionisable side chains
53
what are non-polar amino acids
they are hydrophobic
54
give 6 non polar amino acids
glycine alanine proline valine leucine isoleucine
55
give 5 polar amino acids
methionine cysteine glutamine serine threonine
56
give 3 aromatic amino acids
phenylalanine tyrosine tryptophan
57
what is a peptide bond
a bond between amino acids to form proteins formed via condensation reaction which releases water
58
what determines folding of a protein
charged interactions flexibility physical dimentions
59
give 4 examples of protein structure-function relationship
immunoglobulins fibrous proteins: collagen enzymes channel and carrier proteins, receptors and neurotransmitters