Post Lab Pure Culture Isolation Flashcards

(129 cards)

1
Q

is the process of preserving the integrity and functionality of cells, tissues, and organs held
outside the native environment for extended storage times

A

biopreservation

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2
Q

The primary aim of culture preservation is to

A

maintain
the organism alive, uncontaminated, and without variation
or mutation, that is, to preserve the culture in a condition
that is as close as possible to the original isolate

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3
Q

in fact, some strains of the same species give ____results
with the same procedure

A

variable

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4
Q

It should be emphasized that the
success of any preservation method depends on the use of
the appropriate medium and cultivation procedure and on
the age of the culture at the time of preservation. This is
particularly true when working with bacteria that contain
___ or ____ ___or that exhibit growth
phases such as morphogenesis or spore formation

A

plasmids
recombinant DNA

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5
Q

It should be emphasized that the
success of any preservation method depends on the use of
the appropriate medium and cultivation procedure and on
the age of the culture at the time of preservation. This is
particularly true when working with bacteria that contain
plasmids or recombinant DNA or that exhibit growth
phases such as ____or ________

A

morphogenesis
spore formation

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6
Q

is an important and often neglected aspect of stock culture maintenance. Too often, isolates are
not given strain designations or, if they are, the designations
are not documented in strain data files

A

record keeping

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7
Q

) refers to a specific strain with distinct phenotypic characteristics which should be recorded

A

strain designation

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8
Q

The traditional method of preserving bacterial cultures is by

A

periodic serial transfer to fresh medium

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9
Q

The major disadvantages of the ____ technique are the risks of
contamination, transposition of strain numbers or designations (mislabeling), selection of variants or mutants, and
possible loss of culture, as well as the required storage space.

A

serial transfer technique

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10
Q

Three conditions must be determined when using this
method for the preservation of cultures:

serial culture technique

A

uitable maintenance medium
ideal storage temperature
frequency
between transfers

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11
Q

is not recommended as a longterm preservation method.

A

subculturing

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12
Q

are preferred for subculturing because they
lower the metabolic rate of the organism and thus prolong the period between transfers.

A

minimal media

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13
Q

When a complex
medium is used, more ____transfers may be necessary as
a result of accelerated growth or metabolite accumulation

A

frequent

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14
Q

A variety of bacteria, including members of the Archaea
(11, 19, 21, 29), have been preserved by subculturing in

A

biphasic (liquid-solid) medium

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15
Q

is the preferred method
for subculture is storage in a ___

A

refrigerator

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16
Q

; however, if refrigeration presents a problem,
the simplest method is storage at r

A

room temperature in a test tube rack or specially constructed box containing shelves with holes

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17
Q

Cultures stored in this
fashion require constant care since they tend to dry quickly
and, unless the laboratory has a controlled environment,
are subject to ___fluctuations.

A

temperature

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18
Q

To minimize dehydration, use screw caps with rubber liners, wrap the tube caps in ____

A

parafilm

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19
Q

Do not
select single colonies in transferring cultures, since the chances
of selecting a mutant are greater when this technique is
used.

what preservation method

A

serial transfer

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20
Q

Many bacterial species can be successfully preserved for
months (or years) simply by immersing in a ___

A

sterile medicinal grade oil

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21
Q

type of oil with a specific gravity of
0.865 to 0.890 is also satisfactory (16).

A

paraffin oil

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22
Q

Sterilize 5 ml of oil per Pyrex test tube (18 by 150 mm),
sealed with a metal or other heat-resistant closure by what sterilization technique

A

dry heat

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23
Q

Contamination of cultures when this method is used is often due
to improperly sterilized mineral oil. Each lot of sterilized oil
must be tested for sterility by streaking on an appropriate
medium such as

A

nutrient agar
trypticase soy agar (TSA)

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24
Q

After growth reaches late
___ phase or ____occurs, add the sterile mineral oil aseptically to a depth of at least 2 cm (a slant must
be entirely covered) to prevent dehydration and to reduce
metabolic activity and growth of the culture (16, 33).

A

logarithmic
sporulation

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25
Store the oil-covered culture upright in a refrigerator. Perform viability tests periodically by
removing a loopful of growth and touching it to a sterile filter paper strip to remove the oil Streak the growth on agar plates containing a suitable growth medium such as nutrient agar or Trypticase soy agar. Confluent growth represents good survival, but plates which show few colonies indicate a low viability, and new stocks must be prepared
26
Not recommended due to cell damage from this process.
ordinary freezing
27
cryoptorective agents like __ or ___ can help
DMSO glycerol
28
Control rate of cooling to avoid cell damage what rate
1 to 10oC/min
29
Superior method at -70°C in a mechanical freezer with cryoprotective agents. what method
deep freezing
30
Preserve bacterial suspension with what percent glycerol for deep freezing
30-50
31
Use ____ for additional preservation (15% glycerol, vials at -70°C) in deep freezing
glass beads
32
Long-term storage by ____bacteria, especially effective for spore-forming bacteria.
drying
33
in drying method, spores are resistant due to dehydrated ___
protoplast
34
Inexpensive method using sterile filter paper strips or disks. what method
paper method
35
Suitable for quality control cultures.
paper method
36
Store disks in tubes, use sterile forceps to inoculate broth when needed. what method
papermethod
37
Preserve ___bacteria in dried gelatin drops or disks.
heterotrophic
38
what temperature is better for gelatin method
-20°C
39
what is used for gelatin method with dessicator
phosphorus pentoxide.
40
To propagate, transfer a ___ drop into suitable medium. gelatin methofd
gelatin
41
Preserve bacteria by drying on sterile silica gel granules. what method
silica gel method
42
Preserve bacteria by drying under vacuum on perforated glass beads or porous porcelain beads. what method
porous glass and porcelain beads method
43
Suitable for long-term preservation of bacteria and bacteriophages.
freeze-drying (lyophilization)
44
lyophilization is suitable for long-term preservation of
bacteria bacteriophages
45
Removes water from frozen bacterial suspensions by sublimation under reduced pressure.
lyophilization
46
Dried cells stored away from oxygen, moisture, and light. Rehydration restores them. what method
lyophilization
47
system of lyophilization includes a vacuum pump, condenser, thermocouple vacuum gauge, and heavy-walled tubing.
simple system
48
Centrifuge cell suspension, freeze by vacuum evaporation, constrict vials, and secondary freeze-dry. what method of lyophilization
centrifugal freeze-drying
49
More frequently used. Simple lyophilization system with high-vacuum pump and condenser.
prefreezing method
50
Easier to handle, less contamination risk. Outer vials contain silica gel granules and cotton wad. Inner vials contain bacterial suspension. Labeling: Use ink that withstands ultralow temperatures and solvents. Labeling machine recommended. what vial
double vial
51
Used when sucrose is the cryoprotective agent. what vial in lyophilzation
bulb shaped vial
52
Used when the culture is suspended in skim milk. what vial in lyophilization
tubular vials
53
examples of cryoprotective agents aside from glycerol or DMSO
Skim milk, sucrose, dextran, horse serum, inositol, raffinose, trehalose, methylcellulose, glycine betaine, charcoal.
54
Preparation: Prepare a 20% skim milk solution, sterilize at 116°C for 20 minutes. For agar cultures: harvest growth with skim milk solution. For broth cultures: harvest by aseptic centrifugation, resuspend pellet in skim milk to 108 cells/ml. Standardize cell concentration using OD (0.1 = 108 cells/ml). Use sterile 20% skim milk, avoid for bacteria inhibited by milk (use sucrose instead). Dispense 0.2 ml of cell suspension into each vial, trim cotton plugs. what metho
double-vial chamber method
55
Preparation: Dispense 0.2 ml bacterial suspension into each sterile vial. Push cotton plug 1.3 cm below vial rim, flame rim to remove fibers. Attach sterile latex IV tubing to vial rim using tube stretcher. Freeze-Drying Process: For tubular vials: freeze in dry-ice–ethylene glycol bath, attach to manifold. For bulb-type vials: shell-freeze suspension, attach to manifold. Dry at vacuum <30 µm Hg for 18 hours. Post-Drying: Seal vials below cotton plug with dual-tipped air/gas torch, moving flame up and down. Allow vials to cool. what method
double vial chamber method
56
Preservation in liquid nitrogen at -196°C or vapor phase at -150°C. Successful long-term preservation of fastidious bacteria for over 30 years. Ultralow-temperature mechanical freezers at -70°C can also be used. Precautions against electrical shutdowns or compressor malfunction; use alarms, backup freezers, or generators. what method of preservation
ultrafreezing
57
Glycerol and DMSO, pass through the cell membrane. what kind of cryoprotective agent
intracellular and extracellular protection
58
Dextran, glucose, lactose, mannitol, polyglycol, polyvinylpyrrolidone, sorbitol, sucrose. what kind of cryoprotective agent
extracellular protection
59
are equally effective for a wide range of bacteria.
glycerol DMSO
60
Use actively growing cells at mid-___to late ___ phase.
logarithmic
61
Harvest by aseptic centrifugation, resuspend pellet in sterile fresh medium with 10% glycerol or 5% DMSO. what culture prep method
broth
62
Wash growth from agar surface with sterile broth containing cryoprotective agent. what culture prep method
agar
63
Cooling Rate: Slow cooling (1°C/min) for best preservation. Procedures: Programmable Freezer: Freeze at 1°C/min to -40°C, then at 10°C/min to -90°C. Manual Freezing: Stainless steel pan in mechanical freezer at -60°C for 1 hour, then liquid nitrogen bath for 5 minutes. Alternative: Sealed vials in 95% ethanol in mechanical freezer set at -85°C, then transfer to liquid nitrogen. what method
freezing
64
65
: Greatest recovery of bacteria.
rapid thawing
66
Consult____ for maintenance and preservation of bacterial genera.
Bergey's Manual of Systematic Bacteriology
67
Maintain strictly __conditions during growth, harvesting, dispensing, and freezing. for anaerobes
anaerobic
68
Use ___ cryoprotective agents for anaerobes
prereduced
69
Grow in prereduced broth in Hungate test tubes, harvest cells by centrifugation what genera
anaerobes
70
Flush pipettes, syringes, and vials with oxygen-free gas. what genera
anaerobes
71
Freeze-drying cryoprotectant: ____ (Trypticase soy broth, sucrose, bovine serum albumin, distilled water) for anaerobes
reagent 18
72
Freeze in dry-ice–ethylene glycol bath or store in liquid nitrogen. what genera
anaerboes
73
Preserve by freezing and storage in liquid-nitrogen vapor. Cryoprotectant: DMSO (5% vol/vol) in maintenance broth. what genera
cyanobacteria
74
Harvest cells at early ____ phase, resuspend in cryoprotectant ___ (bovine serum albumin, sucrose, distilled water) for cyanobacteria
stationary reagent 20
75
Require stringent anaerobic conditions for growth. Preserve by freezing and storage at low temperature. Grow on H2-CO2 gas mixture in heavy glass-walled test tubes or serum bottles. Harvest cells, resuspend in medium with 10% glycerol or 5% DMSO. Use N2-CO2 gas mixture for flushing vials. Freeze and store in vapor phase of liquid-nitrogen container. what genera
methanogens
76
Sensitive to preservation process at different growth stages. Harvest cells at proper growth stage for preservation. what genera
Neisseria, Haemophilus, Campylobacter, and Helicobacter Species:
77
Preservation depends on plasmid stability. Stable plasmids can be freeze-dried or frozen by standard methods. Enhance recovery of unstable plasmids by growing in antibiotic-containing medium before and after preservation. what genera
plasmid-containing bacteria
78
can be freeze-dried or frozen by standard methods. what kind of plasmids
stable plastmids
79
Enhance recovery of ___plasmids by growing in antibiotic-containing medium before and after preservation.
unstable
80
Preserve using sterile, air-dried soil. Sterilize soil by autoclaving, inoculate with spore suspension, dry, and store in refrigerator. what genera
sporeformers
81
Valuable resources for microbial germplasm. Serve specific research aims or house diverse microorganisms, cell lines, viruses, and genetic material.
culture collections
82
three types of culture collections
specialized reference national
83
Personal and not intended to be permanent. Narrow variety of microorganisms but extensive in strains. Indispensable for studies in taxonomy, genetics, and strain variability. what kind of culture collection
specialized collection
84
example of specialized collection
Mortimer Starr's bacterial plant pathogen collection at UC Davis.
85
Permanent national resources like ATCC (USA) and NCTC (England). Main functions: Acquire, authenticate, preserve, and distribute reference and type cultures. Provide continuity with past microbial strains for taxonomic research and biotechnological applications. Broad variety of species but may have fewer strains within each species.
national collection
86
Serve as national and international patent depositories. Offer services such as strain identification, safe deposit, and specialized training. Source of strain information, history, data, and applications. what culture collection
national collection
87
are involved in collaborative efforts of scientists, industry, academe, and government agencies and are concerned mainly with one major group or function. These collections may be located in government agencies, universities, or industries associated with the production of goods, chemicals, and drugs
reference collection
88
natural microbial populations are ___ cultures
mixe
89
mass of growth of cells containing only one type of cells is called __
pure culture
90
selective methods include
chemical physical biology
91
chemical methods of selection include
enrichment selection (special carbon or nitrogen) dilute media
92
use of enrichment medium containing ___ to isolate bacteria which can degrade this
a-conidendrin
93
use of enrichment medium containing single source of nitrogen ___ for nitrogen fixing bacteria
N2 gas
94
use of dilute media for isolation (0.01% peptone) is for ___
caulobacter spp.
95
isolation of gram negative bacteria includes the addition of ___ in MacConkey's Agar
bile salts or crystal violet
96
vancomycin, polymyxin, trimetrophim is added to medium to inhibit other interfering intestinal bacteria to isolate this
campylobacter jejuni
97
physical methods of selection includes
heat treatment incubation tempterature pH cell size and motility
98
heat treatment of 80oC for 10 mins is for ____
endospore producing bacteria
99
incubation temp for thermophiles
55oC
100
incubation temp for psychrophiles
0-5oC
101
isolation of lactobacilli, set pH to ___ with ___ buffer to maintain pH
5.35 acetate buffer
102
isolation of vibriae cholera set pH to ___
8.5
103
isolation of __ from oral cavity include the use of membrane filter with pore size of 0.15um
treponema spp.
104
treponema ___ through the filter on underlying agar medium
passes
105
example of biological method of selection
use of susceptible laboratory animals
106
isolation of ___ from sputum sample, injecting sputum sample of patient in mice
s. pneumoniae
107
methods of isolating pure culture (4)
streak plate pour plate spread plate micromanipulator
108
dilution of bacteria on solid media, done by streaking the culture over agar surface
streak plate technique
109
pattern of streaking using streak plate
four quadrant method
110
bacteria get separated from each other by sufficient distance
streak plate
111
one organism produces one colony and is considered as a ___ cutlure
pure
112
colonies developed after streak plate method may require repeated ___for isolation of bacteria from mixed culture
streaking
113
used for isolation of anaerobic bacteria
roll tube technique
114
advantages of streak plate technique
less material required less laborious surface colonies
115
modification of streak plate technique for isolation of anaerobic bacteria
roll tube technique
116
stoppered anareobic culture tobes whose inner walls are coated with ___ media are used, tubes are filled with ___ nitrogen
pre-reduced oxygen free nitrogen
117
to keep anaerobic bacteria from oxygen exposure after removal of stopper, they are flushed with oxgen free __ from ___
CO2 gas cannula
118
inoculation done with transfer loop in anaerobic bacteria held against agar surface as tube being rotated by a ___
motor
119
inoculation of ___bacteria starts at the bottom and drawing the loop gradually upward, the inoculum becomes thinned and well isolated colonies are obtained
anaerobic
120
serial dilutions added to sterile sufficiently cooled agar medium and mixed
pour plate technique
121
advantage of pour plate method
method can be used to determine number of bacteria in sample, quantitative method
122
disadvantage of pour plate
laborious more material time consuming some of the colonies are submerged exposure to 45oC (cannot be used to isolate psychrophiles)
123
serial dilution of mixed culture added onto surface of agar plate, spread evenly
spread plate
124
advantage of spread plate
surface colonies no exposure to higher temp quantitative
125
use instrument and microscope in conjunction
micromanipulator
126
allows controlled movement of micropipette
micromanipulator
127
picked up with micropipette while observing through microscope
single cell
128
single cell is added to nutrient medium, after incubation pure culture is developed from a single cell what method
micromanipulator
129
in micromanipulator, the culture is a ___
clone