Soils Flashcards

1
Q

What is soil? Why is it vital (4)?

A
  • “skin of the Earth” Soils are less than 1 m thick. Array of recently dead material and inorganic material.
    1. medium for root growth and nutrient uptake
    2. major site for nutrient cycling
    3. extremely heterogeneric (physical, chemical, biological)
    4. complex – driven by abiotic soil architecture and high diversity
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2
Q

What are the 3 layers underneath soil?

A
  1. surface soils- subsurface is less complex; less MO’s, less diverse; aerobic
  2. vadose zone- oligotrophic (low nut) and thickness varies
    - Not productive and not in wetlands; inorganic
  3. saturated zone- shallow aquifers, intermediate aquifers, deep aquifers
    - oligotrophic; water table can rise or fall
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3
Q

What is the water table? What affects the water tables movements?

A
  • Where vadose zone meets saturated zone

- How much O2 there is

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4
Q

What are aquifers? 3 types?

A

Disconnected zones by clay

  1. Shallow
    - aerobic
    - lots of H2O movement
    - why shallow water not good for drinking
    - Able to recharge daily
  2. Intermediate
    - recharge slower
    - not contaminated
    - not old or anaerobic
  3. Deep
    - very slow recharge
    - anaerobic
    - not good drinking water
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5
Q

What are wetlands?

A
  • Saturated
  • Bogs have deep layers of peat- undecomposed plant remains- good at preservation
  • anaerobic
  • highly acidic (pH 3.2 to 4.2)- plants evolve to live here
  • peat contains antimicrobial agents
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6
Q

What are bog bodies?

A
  • Bodies preserved in peat
  • No bones
  • Harsh death
  • Anaerobic env- not good at decomposing
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7
Q

What does the type of soil that develops reflect?:

A
-geologically derived parent material
• climate
• vegetation and other organisms
• time (decades to millions of years)
• and topography
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8
Q

What are 12 major soil orders?

A

Gelisols- permafrost

Histosols
Organic matter; mainly contains soils commonly called bogs, moors, peat lands, muskegs, fens, or peats and mucks.

Spodosols
Wood ash; Acidic, and have low fertility and low clay content.

Andisols
weathering of volcanic materials such as ash, resulting in minerals in the soil with poor crystal structure

Oxisols
Tropical; Dominated by iron oxides, quartz, and highly weathered clay minerals such as kaolinite.

Vertisols
Clay-rich soils; shrink as they dry and swell when they become wet.

Aridisols
In climates that are dry; contain accumulations of salt, gypsum, or carbonates, and are found in hot and cold deserts worldwide.

Ultisols
Formed in humid areas and are intensely weathered

Mollisols
Prairie or grassland soils that have a dark colored surface horizon, are highly fertile, and are rich in chemical “bases”

Alfisols
Similar to Ultisols but are less intensively weathered and less acidic. More fertile

Inceptisols
Moderate degree of soil development, lacking significant clay accumulation in the subsoil.

Entisols
Exhibit little to no soil development other than the presence of an identifiable topsoil horizon.

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9
Q

Is sediment soil? Bedrock?

A

NO

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10
Q

What are 2 groups of soil?

A
  1. Mineral soils
    • Derived from rock weathering and other inorganic
    materials
  2. Organic soils
    • Derived from decomposition of organic material
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11
Q

What does soil development depend on? (3)

A

Weathering, water movement, and organic decomposition (all influenced by climate)

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12
Q

What are the layers of soil(5)? Describe each (O has 3 subtypes)

A
  • O- Organic Horizon- Layer of undecomposed plant materials
  • L- litter layer (undecomposed plant debris)
  • F-partially decomposed organic matter
  • H – Humus layer (well decomposed)
  • A- Leached Horizon- Surface soil (high in organic matter, dark in color, is tilled for agriculture; plants and large numbers of microorganisms grow here; microbial activity high)
  • B- Accumulation Horizon- Subsoil (minerals, humus, and so on, leached from soil surface accumulate here; little organic matter; microbial activity detectable but lower than at A horizon)

*C- Partially weathered horizon- Soil base (develops directly from underlying bedrock; microbial activity
generally very low)

*Parent material

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13
Q

What are components of a typical soil?

A
  1. 45% mineral (Si, Fe, Al, Ca, K, Mg, Na)
    - most abundance elements in crust are Si (47%) and O (27%)
  2. 50% pore space (air and water)
  3. 1-5% organic matter
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14
Q

Whats the input of the organic matter from?

A

From plant, animal, and microbial biomass

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15
Q

What are some traits of Humus?

A
  • aromatic, complex
  • very effective at absorbing water and solutes
  • slowly utilized by soil organisms
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16
Q

What does quantity of OM depend on?

A

-Climate
-Temperate soils have increased levels of organic
matter
-desert = 0.1% OM
-temperate forests = 3 to 5% OM
- bogs and wetlands = 20% OM

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17
Q

Whats the solid phase of soil development (1st phase)?

A

-45-50% by volume
• soil particles do not remain as individual entities
• aggregate into 2nd’ary structures or peds
• peds are held together with microbial gums, polysaccarides and other microbial metabolites
• clay containing soils have well-defined peds • sandy soils are less well-defined

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18
Q

Whats a primary surface soil structure? Secondary?

A

1 structure = soil particles + organic matter (humus) + roots + microorganisms

2 structure = aggregate or ped = stability

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19
Q

What is soil stabilized by?

A

By clay-organic complexes, microbial polysaccharides, fungal hyphae and plant roots.

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20
Q

Go label the Diagram on lecture 3 slides page 17

A

GOOD JOB!

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21
Q

What are peds? 6 types?

A
  • Soil structure results from secondary aggregates known as pets.
    1. Granular
    2. Platy
    3. Blocky
    4. Prismatic
    5. Single grain
    6. Massive
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22
Q

What are the pore spaces in soils?

A

Air and water spaces

-Between the aggregate particles and in the aggregate particles

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23
Q

Whats the liquid phase in soils?

A

• aqueous phase and gas phase exist in pores between particles
• soil solutions are a vital component
• soil solutions flow preferentially through large pores • complex chemistry happens here
• dynamic
-Runoff, cation exchange, mircoorganisms, plant roots, precipitation

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24
Q

Whats the gas phase in soils?

A

The composition of the earth’s atmosphere is approximately 79% nitrogen, 21% oxygen, and 0.03% carbon dioxide. Microbial activity in the soil can change the local concentration of these gases especially in saturated areas.

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25
Q

What affects pore size?

A
  • Bioturbation important in pore size

- Pore space may be enlarged by plants, worms, small mammals etc.

26
Q

Where is bacteria in soil?

A

80 to 90% of the bacteria are attached to surfaces and only 10- 20% are planktonic

27
Q

What is cation bridging?

A
  • How bacterial cells attach to a clay particle

- Clay particle neg charge + neg charge bacteria+ pos charge cation= attatchment

28
Q

Benefits of bacteria attachment to soil

A
  • Protects from protozoan grazing
  • Proximity to nutrients
  • Biofilms can protect against toxicity
  • Can alter microenvironment
  • Easier to swap DNA with buddies
29
Q

Where are the bacteria who aren’t attached?

A

Water

30
Q

How much bacteria, actinomycetes and fungi are in soil?

A

Bacteria
Highest numbers; Medium biomass; highest competitiveness; fix N2; aerobic and anaerobic; least tolerant to moisture stress; 6-8 pH; good in all soils
Actinomycetes
Intermediate numbers; medium biomass; least competitive; fix N2; mostly aerobic; intermediate moisture stress tolerance; 6-8 pH; dominate dry, high pH soil
**Fungi **
Lowest numbers; largest biomass; intermediate competitiveness; no N2 fixing; aerobic; most tolerant to moisture stress; 6-7 pH; dominate low pH soils

31
Q

Where is algae in soils?

A

Where sunlight penetrates

32
Q

Where is the highest rates of CO2 production? Lowest?

A
  • Surf soils

- Deep rocks or consolidated sediments

33
Q

Whats the biggest problem to overcome for sampling?

A

-Heterogeneity (diversity) of soil

34
Q

How do people sample soils?

A
  • Sterile tools to a certain depth

- Incubations in situ

35
Q

biotic stressors and abiotic stressors?

A

-biotic stressors - competition, predation, secretion of
allelopathic substances

-abiotic stressors – light, soils moisture, temp, pH, texture, nutrients, redox

36
Q

Things to consider when looking at soil, light and MOs?

A
  • How much light is going to reach various parts of a soil profile?
  • What other physical parameters will be stressors here?
37
Q

Lichen is a symbiotic association of a fungus with a photosynthetic partner. Who’s the mycobiont and photobiont? Example of photobiont?

A
  • fungus (the mycobiont)
  • photosynthetic partner (the photobiont or phycobiont)
  • Green alga (commonly Trebouxia) or cyanobacterium (commonly Nostoc)
38
Q

Explain the symbiotic relationship between fungus and algal (Lichen)

A

-The fungus surrounds the algal cells, in many species penetrating the algal cell wall
-the algal or cyanobacterial cells are photosynthetic producing sugars and N to feed both symbionts
-both gain water and mineral nutrients mainly from the atmosphere
-the fungal partner protects the alga by retaining water

39
Q

How are actinobacteria affected by soil moisture?

A

-prokaryotic bacteria, but are unique enough to discuss as
a group on their own
-elongated cells are hyphae like, but are much smaller
-gram +’ve, mostly aerobic, -degradation of organic material

40
Q

What is source of antibiotics - Streptomyces?

A
  • produces a secondary metabolite – streptomycin
  • must be given by IV, can cause ototoxicity
  • the first antimicrobial agent developed after penicillin • the first antibiotic effective in treating tuberculosis
41
Q

4 types of orgs that prefer diff. soil temps?

A
  • psychrophilic (<20°)
  • mesophilic (20 - 45°C)- decomposers- most
  • thermophilic (45 - 90 °C)
  • hyperthermophilic (>90 °C)
42
Q

Explain denitrification with Pseudomonas stutzeri.

A

Nitrate (NO3) -> Nitrite (NO2) -> Nitric oxide (NO) -> Nitrous oxide (N2O) -> Dinitrogen (N2)

43
Q

Label diagram on slide 50 lecture 3

A

GOOD JOB!

44
Q

What happens during nitrification?

A
  • NH3 and NO2- are oxidized by nitrifying bacteria during the process of nitrification
  • Only small energy yields from this reaction • Growth of nitrifying bacteria is very slow
45
Q

Whats nitrosomonas and nitrobacter role in Nitrogen cycling?

A

Nitrification

  • nitrosomonas- NH4->NO2
  • nitrobacter- NO2->NO3
46
Q

What is nitrosomonas?

A

-Rod shaped chemoautotrophic bacteria
- optimum pH of 6.0-9.0, a temperature range of 20 to 30°C.
- most species are motile with a flagella located in the polar regions.
- Use NRG gained through the oxidation of NH4 to fix gaseous CO2 into organic molecules.
- photophobic; will cover itself
in slime or form clumps with other microbes to avoid light

47
Q

Whats nitrobactor?

A
  • mostly rod-shaped, gram–’ve, and chemoautotrophic bacteria
  • optimum pH of 7.3 and 7.5, and will die in temperatures exceeding 49°C or below 0°C
  • Nitrobacter uses NRG from the oxidation of nitrite ions, NO2-, into nitrate ions, NO3- to fulfill their carbon requirements
  • without these two bacteria, N cycling would cease
48
Q

What are 3 pHs of soils? Undisturbed soil pH?

A

1) Acid soil = < 5.5
2) Neutral soil = 6-8
3) Alkaline soil = > 8.5
6. 8

49
Q

What are fungi?

A

-microscopic cells that grow long hyphae • um in diameter, but can be up to a metre long
- can grow into masses
- not bad in forming peds
• three types:
1. saprophytic fungi – decomposers
2. mycorrhizal fungi – mutualists
3. pathogens/parasites

50
Q

Whats Alternaria? What does it spoil? What does it cause? Are they all pathogens? Useful in what potentially?

A

-Genus of ascomycota fungi
• common human allergens (hay fever)
• spores are airborne and found in soil, water, indoors and outdoors
• form thick colonies that are grey or black
• at least 20% of agricultural spoilage is caused by various species of Alternaria
• Alternaria alternata causes leaf spot and other diseases on over 380 host species
• not all Alternaria sp. are pathogens/pests
• hold promise as biocontrol agents

51
Q

What kind of soils are more favourable than pure sands or clay? Why?

A
  • soils with a mixture of sand, silt, and clay particles are more favourable
  • hold more nutrients, provide better air and water flow
52
Q

What does soil texture define?

A

Defines the mineral particle sizes that make a particular type of soil

53
Q

Why is diversity lower in sand and clays?

A

Very large and very small

54
Q

What are protozoa? 3 shapes?

A

Protozoa – single celled organisms that eat primarily bacteria

  1. ciliates – largest and have hair-like cilia
  2. amoebae – have pseudopods
  3. flagellates – smallest and have whip-like flagella
55
Q

Where are protozoa in soil? What types of soils house small vs large? Roles?

A
  • big, therefore exist in large pores • also need H2O
  • higher clay-content soils contain a higher number of smaller protozoa (flagellates and small amoebae)
  • coarser textured soils contain more large flagellates, amoebae, and ciliates
  • NB in mineralizing nutrients, they release excess nitrogen in the form of ammonium (NH4+)
  • regulate bacteria populations
  • important food source for other soil organisms and help to suppress disease by competing with or feeding on pathogens
56
Q

What nutrients are the main limiters? Where is this not the case?

A
  • C and N are the main limiters
  • most MOs in soil are near starvation and are dormant
  • exception – plant rhizosphere
57
Q

Where are N2 fixers?

A

Common nutrient poor soils

58
Q

Whats Anabaena?

A
  • Anabaena - filamentous cyanobacteria, can form symbiotic relationships with certain plants
  • can produce neurotoxins
59
Q

Where is O2 limiting? Why?

A
  • in water saturated soils, O2 is limiting due to the reduced saturation with depth
  • lower redox conditions are mainly in saturated soils
  • most soil orgs, especially beneficial ones are aerobic
60
Q

What are rice paddy fields? Emissions?

A

-Flooded arable lands used for growing rice and other semiaquatic crops
- Only flooded 4 mo of the year
-significant methane sources (50-100 million tonnes /yr) • contribute ~13% of global
-methane emissions, but the
organisms responsible remained uncultivated (2007)
- abundant and ubiquitous group of methanogens called rice cluster I