Viruses Flashcards

1
Q

What do viruses need?

A

Most have an envelope, a core = capsid, and RNA or DNA

Viral RNA-dependent RNA polymerase required for (–) reading frame

Retrovirus RNA is transcribed in a retrograde fashion requiring a viral reverse transcriptase (RNA-dependent DNA polymerase)

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2
Q

Retro virus characteristics

A

Diploid

nuclear reproduction: reverse transcriptase

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3
Q

What viruses use V RNA-dependent RNA polymerase?

A

Orthomyxo, Paramyxo, Filo, Bunya, Arena, Rhabdo.

Rhabdo is bullet-shaped. (rabies, e.g.)

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4
Q

Special stuff about Reo

A

+/- RNA, double stranded, not enveloped

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5
Q

Special stuff about pox

A

replicates in cytoplasm, DNA-dependent RNA polymerase, enveloped

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6
Q

Parvo virus

A

uses DNA, single strands, not enveloped

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7
Q

Major digestive viruses

A

Rotavirus- childhood gastroenteritis, vaccine preventable, number 1 worldwide

Norovirus (Norwalk), Gastroenteritis, number one in the US

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8
Q

Orthomyxovirus

A

= Influenza

Envelope with surface glycoproteins hemagglutinin (H) and neuraminidase (N)

Neuraminidase inhibitors

Type A can come from animals and can become pandemic. Types B and C not so bad.

antigenic drift–> small changes, epidemics
antigenic shifts –> big changes, pandemics

CHILD + FLU (or chickenpox) + ASPIRIN → REYE SYNDROME

Yearly inactivated vaccines

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9
Q

Paramyxoviruses

A
  • ssRNA with envelope:
  • Parainfluenza
  • Mumps
  • Measles
  • Respiratory syncytial virus
  • Human metapneumovirus (common cold)

Produce multinucleated giant cells (SYNCYTIA) via a cell fusing factor

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10
Q

Parainfluenza

A

a Paramyxovirus

Most common cause of croup laryngotracheobronchitis (barking cough, steeple sign)

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11
Q

Respiratory Syncytial Virus Rx

A

Paramyxovirus

major cause of bronchiolitis and pneumonia in infants

RX- Palivizumab against F-protein

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12
Q

Mumps Virus

A

Paramyxovirus

Enters from salivary secretions (intimate contact) via the pharynx or conjunctiva

Painful enlargement of the salivary glands

Epididymoorchitis in males, which can cause sterility

Prevention: - Immunize with MMR live vaccine

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13
Q

Measles Virus (Rubeola)

A

Paramyxovirus

Koplik spots of mouth precede T-cell mediated rash

Inclusion body encephalitis and/or with chronic infection
subacute sclerosing panencephalitis (SSPE)

93.3% vaccinated = herd immunity

DX- multinucleated measles giant cells (Warthin-Finkeldey cells)

Prevention: MMR live vaccine. Vaccination rate in CO: 86%

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14
Q

Hepatitis Viruses

A

Hep A: PicoRNAviridae (Fecal-Oral transmission). Mostly mild, jaundice.

Hep B: HepaDNAviridae. Dane particle- oncogenic transforming virus
parenteral/ sex transmission
enveloped
–> hepatocellular carcinoma

Hep C: Flaviviradae. Hepatocellular carcinoma
parenteral/ sex transmission
enveloped
–> hepatocellular carcinoma

Hep D: Unassigned virion. (delta antigen)
parenteral/ sex transmission
Onset: Abrupt w/ superinfection or hepatitis B
co-infection
enveloped (by Hep B)

Hep E: Enteric. HepEviridae, fecal-oral transmission

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15
Q

Prevention of various hepatitis viruses

A

Hep A vaccine

Hep B vaccine

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16
Q

Hepatitis - Viral Serology (know this down cold)

A

Acute B - HBsAg: Acute B, &D coinfection

HBcAb- Acute B

Anti-HDV- B& D Co-infection

Acute A- Anti-HAV IgM

Prior C- Anti-HCV
Acute C- Anti HCV
Chronic C- Anti Hcv
Hep E- Anti- HEV HEV RNA

HBsAb IgG with nothing else means they’ve been vaccinated against B.

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17
Q

Retroviruses

A

use reverse transcriptase

Oncornaviruses: HTLV 1 , HTLV 2

HTLV-I –> T cell leukemia/ lymphomas, myelopathy

Lentiviruses are also retroviruses: HIV 1, HIV 2

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18
Q

Lentiviruses

A

are retroviruses

  • can cause multinucleated cells (cell to cell fusion of macrophages)

HIV 1, HIV 2

Can cause AIDS dementia, wasting syndrome

Attach to CD4 receptor & CCR5 (macrophage) or CXCR4 (TH cell) coreceptors

Western Blot (tests for antibodies against viral proteins),

Rx – Antiretrovirals

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19
Q

Important HIV genes

A

gag (early marker of infection from capsid)

pol (reverse transcriptase, integrase. Allows DNA integration into host)

env (binds CD4&CCR5 (macrophage) or CXCR$ (Th cell)

LTR

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20
Q

Herpes viruses

A

produce intranuclear inclusions and multinucleated giant cells
capable of latency

1 & 2 are neurotropic
CMV and EBV are lymphotropic

Types:

HHV 1- herpes simplex 1
HHV 2- herpes simplex 2
HHV 3- varicella zoster virus
HHV 4- Epstein Barr virus (oncogenic transforming virus)
HHV 5- Cytomegalovirus (oncogenic)

6th and 7th apparently cause 6th disease (rash)

HHV 8- Kaposi Sarcoma-associated herpesvirus (oncogenic)

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21
Q

Herpes Simplex

A

Have intranuclear acidophilic Cowdry type A (eosinophilic) inclusions w/ margination of the nuclear chromatin

1- cold sores, gingivostomatitis (–>oropharyngeal blister in kids), fatal sporadic encephalitis

2- genital region. Whitlows- erythematous lesions on toes or nail cuticle.

Rx- acyclovir

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22
Q

Varicella-Zoster

A

Chickenpox (varicella)

Usually transmitted by saliva
Rash: head & trunk –> extremities. asynchronous and centripetal spread)

Shingles (zoster)
Older individuals with reactivation of latent infection
Skin areas innervated by sensory nerves of the dorsal root ganglia
Trigeminal nerve is common distribution

prevention: 2 doses of varicella (VAR) (kids)
Zoster vaccine for older people

23
Q

Epstein-Barr Virus

A

Attach via CD21
= Complement receptor 2 = EBV receptor

Infectious mononucleosis

Atypical activated T-lymphocytes (Downey cells)

Hodgkin lymphoma, Burkitt lymphoma, central nervous system lymphomas, & nasopharyngeal carcinoma

dx- heterophile antibodies (monospot)

24
Q

Cytomegalovirus

A

Owl-eye basophilic intranuclear inclusions

Transmission:
Transplacental - primary infection pregnant mother
Neonatal - cervical or vaginal secretions during birth
Perinatal -breast milk from a mother who has active infection
Saliva – common during preschool years

CMV mononucleosis-syndrome with fever, fatigue and atypical lymphocytes
Congenital cytomegalovirus infection (cytomegalic inclusion disease of the newborn)-in utero infections with jaundice, purpura, hepatosplenomegaly and central nervous system development disorders

25
Poxviridae
Replicate in the cytoplasm of host cell Smallpox Molluscum contagiosum - Common self-limited viral disease caused by Poxvirus look for cytoplasmic inclusions
26
Papillomaviridae (p.k.a. Papovariedae)Human Papilloma Virus
Oncogenic transforming viruses: Viral E6 inhibits p53 protein and E7 inhibits pRB protein High-risk - types 16 and 18 responsible for most cancers and high grade dysplasias prevention: vaccination (females) and physical barriers
27
Polyomaviridae (p.k.a. Papovariedae)BK and JC Viruses
BK - Renal disease (failure) in AIDS or post-transplant patients Dx - BKV DNA by PCR or urine cytology with decoy cells (basophilic nuclear inclusions) JC - Progressive multifocal leukoencephalopathy in AIDS or post-transplant Dx - JCV DNA by PCR
28
Adenoviridae
Acute respiratory disease – serotypes 4,7 &21) upper respiratory infections in kids/young adults that can progress to pneumonia Gastroenteritis - adenoviruses that lead to diarrhea Pharyngoconjunctivitis – pink eye and sore throat Prevention – live adenovirus vaccine
29
Parvoviridae
Parvovirus B19 Naked ssDNA in segments (some positive, others negative) Erythema infectiosum (fifth disease) Fever, arthralgias and cheek rash children Aplastic anemia (infects erythroblasts) Can cause hydrops fetalis via in utero infection
30
Viral Encephalitis
Western/ Eastern Equine Encephalitis (alpha virus) Lt. Louis encephalitis virus (flavivirus) --> St Louis encephalitis West Nile virus (flavivirus) Dengue virus (flavivirus) Colorado tick fever virus (reovirus) --> headaches behind the eyes, photophobia, rash La Cross virus (bunyavirus) Other viruses that can cause encephalitis: HSV, VZV, Influenza, Enteroviruses, Rabies, Mumps, Measles
31
Arboviruses
Arthropod borne viruses Togaviridae: WEE, EEE, VEE encephalitis, chikungunya & rubella Flaviviradae Yellow and dengue fevers, St. Louis and Japanese encephalitis, West Nile virus, hepatitis C Bunyaviradae California encephalitis, Rift Valley fever, hantavirus
32
Togaviruses
Alphaviruses Chikungunya: get viremia with acute febrile illness with malaise, rash and arthritis Eastern and western equine encephalitis (EEE, WEE) ``` Rubivirus (no arthropod vector) – rubella (German measles) Congenital rubella (TORCH syndrome) ``` Flaviviruses (more to follow) Yellow fever virus, Dengue virus, St. Louis encephalitis, Japanese encephalitis, West Nile virus, hepatitis C virus Bunyaviruses California encephalitis, Rift Valley fever, pappataci (sandfly) fever, hantavirus pulmonary syndrome (more in emerging pathogens slides)
33
Rubella/Rubivirus
= German measles Congenital rubella syndrome affects the eyes, heart and brain Infection occurred during 1st trimester of pregnancy
34
Flaviridae
Flaviviruses Mosquitoes St. Louis encephalitis (SLE): viremia (usually asymptomatic), in some CNS involvement causes encephalitis inflammation and neuronal degeneration West Nile encephalitis (WNE): viremia (usually asymptomatic), mild, flu-like cases ("West Nile fever“), more severe "West Nile encephalitis" or "West Nile meningitis" which can lead to death Yellow fever: viremia with severe systemic disease (fever, headache, nausea and vomiting) followed by liver damage and intestinal hemorrhages (jaundice, shock and death) Dengue fever: virus replicates in the skin and then goes to lymphoid tissue followed by a viremia which results in fever and rash lasting 3-9 days (self-limited) but can get dengue hemorrhagic fever (immunopathologic processes produce extreme vascular permeability, shock and death and associated with serotype 2)
35
Picornaviruses
Heparnavirus – discussed with hepatitis viruses Rhinoviruses - Attach via ICAM-1 receptor to respiratory epithelial cells Enteroviruses (Poliovirus, Coxsackievirus, Echovirus, etc.) - spread fecal-oral
36
Enteroviruses
Polioviruses Prevention- Inactive (Salk vaccine), oral (Sabin vaccine) Coxsackie A & B can cause aseptic meningitis. A Group A - herpangina, acute hemorrhagic conjunctivitis & hand-foot-and-mouth disease Group B - pleurodynia, myocarditis, pericarditis, and hepatitis Echoviruses
37
Rhabdoviridae/Rabies
bullet-shaped (think: shoot the rabid dog) (encephalitis) via acetylcholine receptor with retrograde axoplasmic transport to dorsal root ganglia and spinal cord Negri bodies (Neurons accumulate ribonucleoprotein as intracytoplasmic inclusions) hydrophobia, anxiety, dilation of pupils Once symptomatic death is almost certain despite optimal supportive care Prevention: vaccines for dogs and cats
38
Emerging Infections
cholera, cryptosporidiosis, Ebola hemorrhagic fever, dengue fever, hantavirus pulmonary syndrome, hep C, HIV/ AIDS, influenza, legionnaires' disease and Pontiac fever, malaria, MRSA, SARS, VISA/ VRSA, Staph aureus, West Nile virus Of Biodefense importance: Ehrlichiosis, Hep C and E, among many others.
39
Enterovirus 68
not polio, but polio-like acute flaccid myelitis, new outbreak in US 2014-2015 Appears to be related to enterovirus 68
40
Zika Virus
Appears to be associated with development of Guillain-Barré syndrome Appears to be associated with microcephaly, lissencephaly and other neurologic malformations with in utero infections (highest risk in second trimester) Vector is aedes mosquito species
41
Viral Hemorrhagic Fevers
RNA viruses Arenaviridae – South American hemorrhagic fever viruses and Lassa Fever Filoviridae – Ebola (4 subtypes) and Marburg viruses Bunyaviridae – Rift Valley fever & Crimean-Congo hemorrhagic fever Flaviviridae – Dengue hemorrhagic fever Rhabdoviridae – Bas-Congo virus hemorrhagic fever usually insect vector
42
Ebola (hemorrhagic fever)
Person-to-person transmission via blood or body fluids (urine, saliva, sweat, feces, vomit, breast milk, and semen) Symptoms appear 2 to 21 days after exposure 25-90% mortality
43
Dengue Fever
Classic dengue fever, “break bone fever,” - acute onset of high fever 3–14 days after the bite, frontal headache, retro-orbital pain, myalgias, arthralgias, hemorrhagic manifestations, rash, and low white blood cell count Dengue hemorrhagic fever - Fever lasting 2–7 days with any hemorrhagic manifestation, thrombocytopenia, evidence of increased vascular permeability. Can have severe abdominal pain, CNS symptoms, shock. RX- supportive, IV fluids, Dextran 40
44
Powassan virus
Tick (Ixodes) borne virus found mostly in Canada, northeast and Great Lakes regions, and Russia 1 week to 1 month incubation and infections range from asymptomatic to encephalitis and meningitis Fever, headache, vomiting, weakness, confusion, loss of coordination, speech difficulties, and seizures 50% develop permanent neurologic deficits 10% die
45
West Nile Virus
Vector - mosquito (lots of different species) Human to human via blood or milk Acute viremia Usually subclinical infections or viral syndrome (20%) Maculopapular rash in 50% with viral syndrome Meningoencephalitis (
46
Chikungunya Virus
Symptoms begin 3–7 days after being bitten by infected Aedes mosquitos ``` Most common symptoms are fever and joint pain Self limited (1 wk. most symptoms and months for joints) ```
47
SARS Virus
Severe acute atypical respiratory syndrome due to a novel coronavirus No cases since 2003 outbreak
48
MERS Coronavirus
Middle East Respiratory Syndrome Coronavirus Asymptomatic to severe acute respiratory syndrome (fever and pneumonia) in person coming from Arabian peninsula or in close contact with MERS patient Spread via saliva, respiratory droplets
49
Bunyaviridae
California encephalitis- California encephalitis virus via mosquitos in Kern and Marin counties, CA La Crosse encephalitis- La Crosse virus via mosquitos in Eastern U.S. Hantavirus – worldwide Hemorrhagic fever with renal failure – Asia and Europe Pulmonary syndrome - spread via aerosolized rodent excrement causing pulmonary edema with 40% mortality; in U.S. around “four corners” region (Arizona, Colorado, New Mexico and Utah) Deer mice is carrier in Four Corners region serology to “Sin Nombre” virus; p.k.a “Four Corners virus”
50
Elizabethkingia spp.
Ubiquitous soil bacteria that also live in the gut of Anopheles gambiae mosquitos Can colonize human respiratory tract E. anopheles 2015-16 community acquired outbreak from unknown source in debilitated elderly around Milwaukee, Wisconsin has killed 15 (of 52 patients) as of March, 2016
51
Bioterrorism CDC Categories
Category A - can be easily disseminated or transmitted from person to person; result in high mortality - anthrax, smallpox (variola major), Viral hemorrhagic fevers (arenaviruses, bunyaviruses - hantaviruses, rift valley fever, crimean congo hemorrhagic fever, flaviruses- dengue, filoviruses- ebola & marburg) Category B - moderately easy to disseminate; result in moderate morbidity rates and low mortality rates; - Brucellosis (brucella species), Ricin toxin, water safety threats (vibrio cholerae, e.g.) Category C - emerging pathogens that could be engineered for mass dissemination. Emerging infectious diseases such as Nipah virus and hantavirus. SARS and MERS.
52
Anthrax and bioterrorism
Rx- 3 concurrent antimicrobials Anthrasil (anthrax immune globulin intravenous [human]) for inhalational anthrax vaccine: Ava/BioThrax (used for combatants)-
53
Smallpox in bioterrorism
Smallpox Variola virus Respiratory transmission Dx –Characteristic deep skin lesions with centrifugal pattern (mostly face and extremities) and synchronous development on individual areas of the body Smallpox vaccine – live vaccinia virus preparation