B4 - Enzymes Flashcards

1
Q

What are enzymes?

A
  • globular proteins that interact with substrate molecules
  • they act as catalysts to metabolic reactions in living organisms
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2
Q

What is a metabolic reaction?

A
  • it is the sum of an anabolic (building up) and a catabolic (breaking down) reaction
  • can only take place as a result of the control/order imposed by enzymes
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3
Q

Example of an anabolic reaction

A
  • cellulose forming the walls of plant cells
  • long protein molecules forming contractile filaments of muscles in animals
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4
Q

Example of a catabolic reaction

A
  • growth (living processes)
  • energy released from large organic molecules (glucose) in metabolic pathways
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5
Q

What is ‘Vmax’?

A
  • maximum initial velocity of the enzyme catalysed reaction
  • enzymes can only increase the rates of reaction up to this point
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6
Q

What are intracellular enzymes?

A
  • a type of enzyme that aids the metabolic processes inside the cells that secreted them
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7
Q

What is an example of an intracellular enzyme?

A
  • catalase ensures that hydrogen peroxide is broken down into oxygen and water
  • benefits = it is time efficient so it minimizes the risk of damage
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8
Q

What are extracellular enzymes?

A
  • a type of enzyme that works outside of the cell that secreted them
  • cells require substrates (raw materials) to make products needed by the organism
  • the nutrients are often in forms of large molecules and need to be broken down
  • enzymes are released from the cells to break down these large nutrient molecules
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9
Q

What are examples of extracellular enzymes?

A
  • amylase (salivary glands/pancreas) is a digestive enzyme that breaks down starch polymers into maltose
  • maltose is then broken down into glucose by maltase
  • trypsin (protease) catalyses the digestion of proteins into smaller peptides
  • produced in pancreas and released into small intestine
  • amino acids are produced and absorbed into the bloodstream
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10
Q

What are the properties of enzymes?

A
  • tertiary structure (interactions between R-groups)
  • active site is complementary to the shape of substrate molecule
  • have the ability to reduce the activation energy required for a reaction to occur
  • activity is affected by temp., pH, enzyme conc. and substrate conc.
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11
Q

What is the lock and key hypothesis?

A
  • idea that only a specific substrate will fit the active site of an enzyme
  • forms an enzyme-substrate complex
  • the substrates react and form an enzyme-product complex (products are then released)
  • the right atom-groups and the R-groups (within active site) will react/interact with the substrate, forming temporary bonds
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12
Q

What is the induced-fit hypothesis?

A
  • recent research evidence has shown that the active site of an enzyme slightly changes its shape as substrate enters
  • the initial interaction is relatively weak but they rapidly induce changes in the enzyme’s tertiary structure
  • this weakens a bond/bonds in the substrate and lowers the activation energy
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13
Q

What factors affect enzyme activity?

A
  • temperature
  • pH
  • substrate/enzyme conc.
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14
Q

How does temperature affect enzyme activity?

A
  • increase = increases K.E. of particles which causes them to collide more frequently (increases rate of reaction)
  • Q10 is a measure of how much the rate of reaction increases with a 10 d.C. rise
  • denaturation:
    • at extremely high temperatures bonds holding the protein together vibrate
    • this increases until they strain/break causing a change in the tertiary structure
    • the change in shape means they have denatured so the active site is no longer complementary to the substrate
  • optimum:
    • highest rate of activity takes place
    • human body = 40 d.C
    • ** once enzymes have denatured past the opt. temp., the decrease in rate of reaction is rapid **
  • extremes:
    • cold = enzymes controlling metabolic activities of organisms
    • they tend to have more flexible structures and are less stable than enzymes working at higher temps.
    • thermophiles = organisms adapted to living in very hot environments
    • enzymes are much more stable as they have an increased no. of bonds (H and S)
    • their active sites and shapes are more resistant to temp. rises
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15
Q

How does pH affect enzyme activity?

A
  • change in pH = change in hydrogen ion conc.
    • acidic = more
    • alkaline = less
  • this causes a change in the hydrogen and ionic bonds between the amino acid R-groups
  • optimum pH = active site is in the right shape
  • renaturation = when pH returns to opt. and protein/active site resumes its normal shape to catalyse the reaction again
  • a more significant change will irreversibly alter the structure and enzymes will become denatured
  • low/high pH = less R-group interaction
  • enzyme will only function within a narrow pH range
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16
Q

How does substrate/enzyme conc. affect enzyme activity?

A
  • substrate:
    • increase = more frequent successful collisions with enzyme active sites
    • so more enzyme-substrate complexes are produced
    • rate of reaction increases til Vmax as all active sites are occupied by substrate particles
  • enzyme:
    • increase = more available active sites for the substrate
    • increases rate of reaction so reaction rate rises towards higher Vmax
17
Q

How is metabolic activity controlled within cells?

A
  • enzymes are activated with cofactors and inactivated with inhibitors
  • inhibitors = molecules that prevent enzymes from carrying out their normal function (catalysis)
18
Q

What is competitive inhibition?

A
  • a molecule that is similar to the substrate complementary to the enzyme’s active site
    • blocks substrate from entering the active site so reaction cannot take place
  • substrate and inhibitors compete to bind too the active site
  • this slows down the rate of reaction as less substrate molecules are bound in a given time
  • e.g. statins inhibit the synthesis of cholesterol
  • helps to reduce blood cholesterol concs.
19
Q

How does competitive inhibition affect rate of reaction?

A
  • reduces rate of reaction but does not change the Vmax of the enzyme
  • increasing substrate conc. will allow for original Vmax to be reached
20
Q

What is non-competitive inhibition?

A
  • inhibitor binds to an alternative area on the enzyme (allosteric site)
  • causes the tertiary structure of the protein to change, changing the active site
    • so it is no longer complementary to the substrate
  • this prevents the enzyme from carrying out its function
  • e.g. organophosphates (insecticides, herbicides) irreversibly inhibit the enzyme for nerve impulse transmission
21
Q

How does non-competitive inhibition affect rate of reaction?

A
  • increasing enzyme/substrate conc. will not overcome its effect
  • increasing the conc. of the inhibitor will further decrease the rate of reaction
22
Q

What is end-product inhibition?

A
  • where the product of a reaction acts as an inhibitor to the enzyme that produces it
  • example of a negative feedback control mechanism
  • excess products are not made/resources are not wasted
23
Q

What is the difference between a cofactor and a coenzyme?

A
  • cofactor:
    • transfer atoms/groups from one reaction to another (multi-step pathway)
    • inorganic = minerals like iron, chloride, calcium, zinc ions
  • coenzymes:
    • similar but it is an organic molecule
    • derived from vitamins (B5, B3)
24
Q

What are prosthetic groups?

A
  • they are cofactors which are required to carry out a catalytic function
  • tightly bound to the enzyme protein to form a permanent feature
25
Q

What is precursor activation?

A
  • inactive precursor enzymes = produced in an inactive form
    • particularly enzymes that can cause damage within cells
  • they need to change their tertiary structure in order to be activated
    • precursor protein is added first (apoenzyme)
    • holoenzyme = when cofactor is added and enzyme has been activated