BIO 205 DNA MUTATION AND REPAIR Flashcards

(47 cards)

1
Q

sources of DNA damage

A
  1. spontaneous (self-generated)

2. environmental

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2
Q

SPONTANEOUS DAMAGE

A
  • hydrolytic attack
  • oxidative attack
  • replication error
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3
Q

what is hydrolytic attack

A

common food preservatives & processed foods (nitrates, nitrites)

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4
Q

what is oxidative attack

A

breaks down DNA backbone

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5
Q

ENVIRONMENTAL DAMAGE

A
  • chemical exposure
  • ionizing radiation
  • UV exposure
  • vaping
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6
Q

examples of chemical exposure

A

tobacco, food chemicals, pollutants, chemotherapeutics

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7
Q

examples of ionizing radiation

A

x-ray, gamma-ray

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8
Q

UVA versus UVB

A

UVA burns skin

UVB burns DNA (2-10% reaches basal layer)

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9
Q

DNA damage can lead to ___

A

mutations

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10
Q

which DNA damage is passed on through generations

A

germ line

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11
Q

two types of DNA damage

A
  • germ line

* somatic

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12
Q

germ line mutation example

A

sickle cell anemia
• genetic disease
• inherited blood disorder

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13
Q

what is sickle cell anemia

A

single nucleotide change (A to T)

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14
Q

somatic mutation

A
  • CANNOT BE PASSED
  • proliferating cancer cells
  • changes of getting cancer = age correlated
  • cannot be passed
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15
Q

types of DNA mutations

A

point mutation, deleting, insertion, frameshift

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16
Q

point mutation also called ____

A

single base substitution

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17
Q

which DNA mutation is most common

A

single-base sub. / point mutation

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18
Q

point mutation

A

one letter change

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19
Q

deletion

A

base is removed from the DNA sequence

20
Q

insertion

A

base is inserted into the DNA sequence

21
Q

deletion/insertion not drastic when ____

A

in multiples of 3

22
Q

In insertion or deletion can cause a ________

A

frameshift mutation

23
Q

large scale damage: The four types of chromosomal mutations

A

deletions, duplications, inversions, translocations

24
Q

codons are always __ base-pairs (nucleotides) in length

25
frame shift mutation
every nucleotide changed from error --- continuing
26
example of large scale damage
chromosome 9 and 22 SWITCH • chrom 9 derivative • Philedelphia chrom • Fusion product is uncontrolled • BCR/ABL Gene fusion results in CML (chronic myeloid leukemia)
27
DNA alterations leading to mutations
* Damage by water * Deamination * Depurination * UV radiation * High energy radiation
28
DNA alterations: damage by water
cleavage by addition of H2O | (hydrolysis) - leads to loss of purine
29
DNA alterations: deamination
* hydrolysis reaction of C to T/U | * substation of one base pair for another
30
DNA alterations: depurination
missing A or G (nothing to pair with) • remove pair (frame shift) • or replace unpaired
31
steps in DNA repair systems
search, recognize, excision
32
types of DNA repair systems
* mismatch excision repair * nucleotide excision repair * base excision repair * double-strand break repair
33
what DNA Polymerase is responsible for repair in eukaryotes
polymerase II
34
MISMATCH REPAIR (MMR) summary
• base mismatches or small insertion/deletion loops
35
how does mismatch repair work in E. COLI
1. mut S recognizes mismatch on nonmethylated daughter strand (temporarily unmethlyated after replication) 2. mut L binds to mut S 3. L activates H, which cleaves the unmethylated strand opposite site of methylation 4. S and L (with helicase - keeps strands separated - and exonuclease) cut out mismatched portion 5. gap filled by polymerase III, sealed by ligase
36
how to know what is parent strand? | new strand?
* parental is methylated | * daughter strand is TEMPORARILY unmethylated after replication
37
what does mismatch repair involve in E. COLI
mut S, mut L, mut H proteins
38
mechanism of DNA mismatch repair in eukaryotes
newly synthesized strand and template strand difference UNKNOWN - new strand has nicks
39
defects in mismatch repair mechanisms in eukaryotes lead to
hereditary colon cancer in humans
40
nucleotide excision repair needed for DNA damaged by __
UV radiation
41
harmful UV radiation effects... thymine dimer :
* 2 adjacent thymine bases become covalently bonded to one another - form THYMINE dimer * creates a kink in the DNA that blocks the progression DNA polymerase * If unrepaired, polymerase skips over the dimer, resulting in a small deletion
42
Nucleotide Excision Repair (NER) used for
repairing thymine dimers and pyrimidine dimers | - targets bulky lesions, removes DNA on either side
43
steps of nucleotide excision repair
1. Recognition of abnormal dimers 2. Excision of a segment (includes dimer) 3. DNA Polymerase fills gap 4. Gap sealed by DNA Ligase
44
Xeroderma pigmentosum caused by
UV radiation | - an inherited disease that results from failure to repair pyrimidine (thymine) dimers
45
high energy radiation causes
single & double-stranded breaks in DNA (splitting a chromosome in two)
46
Xeroderma pigmentosum facts:
- extreme sensitivity to sunlight - predisposition to skin cancer (8 y/o) - recessive
47
hemimethylated
one strand methylated