Biochemistry Flashcards

(72 cards)

1
Q

Vitamin B1

A

thiamine

active- thiamine pyrophosphate (TPP)

Decarboxylation reactions

Beri beri, Wernicke-Korsakoff syndrome

water soluble

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2
Q

Vitamin B2

A

riboflavin

Flavin adenine dinucleotide (FAD)

oxidation reduction reactions

cheilosis

water soluble

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3
Q

Vitamin B3

A

niacin

active- nicatinaminde (NAD+) and adenine dinucleotide (NADP+)

oxidation reduction reactions

pellagra (4 D’s- dementia, diarrhea, dermatitis, death)

water soluble

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4
Q

Vitamin B5

A

active- pantothenate

Structural component of CoA

water soluble

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5
Q

Vitamin B6

A

pyridoxine

active- pyridoxal-5-phosphate

transanimation reactions- trans am has a B6 engine

water soluble

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6
Q

Vitamin B7

A

biotin

active- biocytin

carboxylation reactions

water soluble

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7
Q

Vitamin B9

A

`folic acid/folate

active- tetrahydrofolate

megaloblastic anemia

water soluble

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8
Q

Vitamin B12

A

cobalamin

active- methylcobalamin

homocysteine remethylation reactions

pernicioius anemia

buildup of homocysteine, deficiency of methionine

water soluble

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9
Q

Vitamin C

A

ascorbic acid

collagen

scurvy

water soluble

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10
Q

Vitamin A

A

Active: retinal, retinoic acid* (most active)

vision and growth

Nightblindness = "nyctolopia"
**Keratomalacia = cornea degeneration**
Xeropthalmia = dry eyes

fat soluble, stored in liver

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11
Q

Vitamin D

A

Active: 1,25-dihydroxycholecalciferol

Rickets in kids
Osteomalacia in adults

fat soluble, stored in liver

Vitamin D Synthesis:

  1. ) 7-DHcholesterol <strong>→ (UV LIGHT) →</strong> D3 (Cholecalciferol)
  2. ) D3 → <strong>(LIVER )</strong>→ 25OHD3
  3. ) 25OHD3 → <strong>(KIDNEY )</strong>→ <strong>1,25 Dihydroxycholecalciferol </strong>(active form)
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12
Q

Vitamin E

A

Alpha-tocopherol

lipid antioxidant, membrane

XS = diarrhea

best srouce = wheat germ oil

fat soluble, stored in liver

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13
Q

Vitamin K

A

Hydroquinone
Menadione

green leafy vegetables

blood clotting

infants always “deficient”

made by flora

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14
Q

Chromium

(Cr)

A

mineral

deficiency: impaired glucose tolerance

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15
Q

Cobalt

(Co)

A

Constituent of Vit B12

deficiency: pernicious anemia

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16
Q

Magnesium

(Mg)

A

Mg : Ca ratio = 1 : 2

muscle weakness
sleepiness

<em>mineral deficiency of Ca or Mg = <strong>tetany</strong> </em>
(Ca and Mg track together)

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17
Q

Iodine

(I)

A

Thyroxine (T4)
Triiodothyronine (T3)

Deficiencies:
adults → goiter, myxedema
children → cretinism

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18
Q

Iron

(Fe)

A

heme enzymes

transported as transferrin
stored as ferritin

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19
Q

Selenium (Se)

A

antioxidant

(<strong>Antioxidants: “ACE’S” = </strong>Vit’s A, C, E + Selenium)

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20
Q

Zinc

(Zn)

A

Vitamin A
(Zing is a VitA constituent? or aids in VitA metabolism? Why is Vit A in my notes?)

immune system

taste

wound healing

prostate

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21
Q

Fluoride

(F)

A

teeth hardness

deficiency = cavities/ "dental caries"
excess = hyperfluorosis
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22
Q

Methylation Cycle

A

Methionine Synthase = enzyme activated by B12

  • *Demethylization =** Methionine → Homocysteine (Hcy)
  • *Remethylization =** Homocysteine → Methionine

<strong>Notes:</strong><br></br>B9 gives methyl group to B12<br></br>B9 deficiency affects B12, visa versa<br></br>B12 deficiency = <strong>pernicious </strong>anemia (if intrinsic fx low) or <strong>megaloblastic </strong>anemia<br></br>VitB deficiency during <strong>remethylization</strong> = Methionine deficiency

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23
Q

Iron Absorption

A

Fe3+ = Ferric
(in food)
Vit C

Fe2+ = Ferrous (most absorbable)
(absorbed in intestines)
Cu<strong>2+</strong>

Fe3+ = Ferric (most active)
used in body

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24
Q

Calcium

A
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25
Antioxidants
**Vit A Vit C Vit E** **Selenium** Glutathione Lipoic Acid **CoQ10**
26
Calcium levels
increased by **PTH** decreased by **Calcitonin** Calcitonin "tones down" calcium in blood
27
Monosaccharides Aldehydes vs Ketones
* *Aldehydes:** C = O on carbon #1 * *Ketones:** C = O on carbon #2
28
Relevant Monosaccharides
``` Glucose = *aldohexose* Galactose = *aldohexose* Mannose = *aldohexose* Ribose = *aldo**pentose*** Fructose = ***keto**hexose ``` **aldehyde*** = carbonyl group on 1st carbon ***ketone*** **=** carbonyl group on 2nd carbon
29
Monosaccharide Properties
**Isomers** = different compounds, same chemical formula **Epimers** = monosac. differing in configuration around one specific carbon **Enantiomers** = mirror images of same compound **Anomers** = anomeric Cs formed when sugars cyclize. designated as either **α** or **β**
30
Disaccharides
glucose + fructose = **sucrose** ( α1, β2 ) glucose + galactose = **lactose** ( β1,4 ) glucose + glucose = **maltose** ( α1,4 ) * glucose + glucose = **isomaltose** ( α1,6 ) * glucose + glucose = **cellobiose** ( β1,4 ) update this card w. bonds***
31
Polysaccharides\* human vs plant
_Humans_ * **glycogen**: contains **α1,4** (primary) and **α1,6** (branches) linkages _Plants_ * **amylose:** contains **α1,4** linkages starch 10-20% * **amylopectin:** both α1,4 and α1,6 linkages starch 80-90% * **cellulose:** contains **β1,4** linkages (fiber, can't b/d)
32
Polysaccharides\* notes, con't...
**Glycogen** * α1,6 linkage = branch point * "most highly branched" **Amylose =** **α-amylase** b/d amylose → maltose **Amylopectin =** homolog of glycogen **Cellulose** = humans can't break β1,4 linkages, don't have cellulose Humans glycogen: contains α1,4 (primary) and α1,6 (branches) linkages Plants amylose: contains α1,4 linkages starch 10-20% amylopectin: both α1,4 and α1,6 linkages starch 80-90% cellulose: contains β1,4 linkages (fiber, can't b/d)
33
**Glycosaminoglycans** | (GAGs) ## Footnote *"mucopolysaccharides"*
bind large amounts of water structure: repeating disaccharide unit (protein-sugar molecule - glucosamine) _Most common_ * *Hyaluronic acid** (in synovial fluid) * *Chondroitin sulfate** (in cartilage, tendons, ligaments)
34
Lipids
**ester bonds** (acid + alcohol) **triacylglycerols** (TAGs) = 3 FA *esterified* into glycerol backbone (acid + alcohol) TAGs = **most** **predominant** form of fats/lipids in body and diet (glycerol comes from glucose)
35
Fatty Acids
**nonpolar** hydrocarbon tails ( - CH2 - ) attached to a **polar** carboxylic acid ( COOH ) head * *unsasturated = double bonds** * \*decreases melting temperature* **naturally occurring double bonds** exist in ***cis-configuration*** **Hydrogenation makes trans-fats** (raise melting point, increase shelf life)
36
Oxidation/Reduction Reactions
**_OIL RIG_** **Oxidation** = loss of e- or hydrogen (gain oxygen, make NADH) **Reduction** = loss of e- or hydrogen (lose oxygen, use NADH) *to generate an unsaturated fat from a saturated fat = oxidation (fewer H / "OIL")*
37
Peroxidation
* **more unsaturated an oil is, greater chance to go rancid** * more C = C * **olive oil lasts 6 months** * most rancid = PUFAs, then MUFAs * **coconut oil is most saturated** * **​**no cholesterol, medium chain, body burns fat * oleic acid (omega-9) makes up 55-80% of olive oil * **canola oil = manmade** 18:1 ratio for something(?) ask bethanie
38
Saturated Fats
Lauric Acid = 12C Myristic Acid = 14C **Palmitic Acid = 16C** Stearic Acid = 18
39
Unsaturated Fats
**Oleic Acid** = 18C (1 C=C) **Linoleic** **Acid** = 18C (2 C=C) **Linolenic** **Acid** = 18C (3 C=C) **Arachidonic** **Acid** = 20C (4 C=C)
40
Essential Fatty Acids
Linoleic Linolenic Arachidonic
41
Linoleic Acid
essential fatty acid omega-6 sunflower, safflower, corn oil 18C **2 C=C** in cis-form
42
Linolenic Acid
**essential** fatty acid omega-3 flax oil **18C** **3 C=C** in cis-form
43
Arachidonic Acid
essential fatty acid omega-6 animal products (dairy, red meats) \*precursor to prostaglandins 20C 4 C=C in cis-form
44
Phospholipids
* *2 FA** (**nonpolar**, hydrophobic **tails**) * *+** **polar**, hydrophilic **head** **groups** major components of membrane lipids
45
Sphingolipids
non-glycerol lipids sphingosine backbone ***sphingomyelin*** = major lipid component of **myelin** **sheath** deficiency of *sphingomyelinase* **= Neimann-Pick Disease** can't breakdown sphingomyelin
46
Cholesterol Synthesis
sterol most abundant sterol in humans derived from **AcCoA** AcCoA → HMG-CoA SYNTHASE → HMGCoA HMGCoA → HMG-CoA REDUCTASE → Mevalonate Mevalonate → Squalene → Cholesterol → (steroid hormones) - - - HMG-CoA Reductase = RLE of cholesterol synthesis - - - (HMG-CoA Synthase = RLE of ketone body synthesis)
47
Cholesterol Elimination
Cholesterol → bile salts → reabsorbed Cholesterol → bile salts → GI system → feces **fiber binds bile salts to increase elimination of cholesterol**
48
Ketone Bodies
**Acetone** * *Acetoacetate** * "acetoacidic acid"* * *betahydroxybuterate** * "betahydroxybutyric acid"* | (breathe)
49
Chylomicrons
lipoproteins * produced* *and* *secreted* from * *intestinal mucosal cells** dietary fats are absorbed and repackaged as chylomicrons "produced in response to dietary fat intake" carry TAGs to peripheral tissues TAGs = dietary fats and cholesterol
50
VLDL
synthesized and secreted from **liver** transport endogenous **triacylgrlycerides** to peripheral tissues
51
LDLs
derived from VLDL transport **cholesterol** from liver to peripheral tissues LDL: **L**eaves **D**a **L**iver **contain greatest amount of cholesterol** ↑ plasma levels of LDL **= increased risk of heart disease**
52
HDLs
synthesized and secreted from liver transport **cholesterol** from peripheral tissues back to liver ↑ plasma levels of HDL = decreased risk of heart disease
53
Lipoprotein Lipase
uptake of triglycerides/FAs that are carried by VLDL and chylomicrons
54
Density of Lipoprotein Molecules | ( = Protein/TAG ratio)
1. **HDL** g*reatest* 2. **LDL** 3. IDL 4. **VLDL** 5. **Chylomicrons***least*
55
Nucleic Acids DNA and RNA
**phosphate** + **pentose sugar** RNA = ribose, DNA = deoxyribose
+
**nitrogenous base** formation of deoxyribose from ribose is what type of reaction = reduction
56
Nitrogenous Bases
**Purines (AG) =** Adenine and Guanine "pure as gold" **Pyrimidines (TUC) =** Thymine, Uracil, Cytosine "King Tuc" DNA Only RNA Only * *nucleo**_s_**ide** = pentose sugar + nitrogenous base * *nucleo**_t_**ide** = pentose sugar + nitrogenous base *+ phosphate*
57
DNA
``` purines = **AG** pyrimidines = **CT** ``` Base Pairing: (**A**-**T**) (**G**-**C**) At The Golf Course **phosphodiester bonds = covalent** between 3' of one sugar and 5' of another **hydrogen bonds** only in DNA, not RNA Q: What is DNA associated with? A: Histones (act as spools which DNA winds)
58
RNA
``` purines = **AG** pyrimidines = **CU** ``` (**A**-**U**) (**G**-**C**) **phosphodiester bonds = covalent** between 3' of one sugar and 5' of another **no hydrogen bonds**
59
Replication
DNA → DNA Nucleus S phase of cell cycle 5'→3' direction anti-parallel and non-comparable Enzyme: DNA Polymerase
60
Transcription
DNA → mRNA Nucleus proceeds in 5'→3' direction every 3 bases = **codon encodes for a single amino acid
First AA alwasys coded for = methionine
** Enzyme = **RNA Polymerase** Start Codons: **AUG, GUG** Stop Codons: **UAA, UGA, UAG**
61
Translation
mRNA → protein Cytoplasm mRNA, tRNA, and ribosomes 2 codons exposed at a time codon of mRNA is recognized by anticodon on tRNA tRNA bound to specific AA Enzyme: *peptidyl transferase* links 2 AAs, begins protein synthesis
62
Protein Synthesis
Ribosomes read mRNA **5' → 3' ** synthesis proceeds from N-terminus to C-terminus Always add AA @ C-terminus during **translation**
63
Reverse Transcription
RNA back to DNA
64
**Phosphatase**
**removes phosphate**
65
Phosphorylase
adds phosphate
66
Kinase
moves phosphase around
67
Dehydrogenase
oxidation/reduction reactions
68
Carboxylase
adds a carbon
69
Decarboxylase
removes a carbon
70
Eicosanoid Families
prostaglandins prostacyclins thromboxanes leukotrienes
71
Glycolysis occurs in
cytosol
72