Ch 6 and Ch 8 Flashcards

(71 cards)

1
Q

metabolic pathways

A

produce energy through chemical ractions

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2
Q

catabolic pathways

A

degrade complex molecules, break their bonds for energy

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3
Q

anabolic pathways

A

build complicated molecules, consume energy and store in the bonds

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4
Q

bioenergetics

A

how energy flows through living systems

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5
Q

kinetic energy

A

moving energy that can produce work, when molecular bonds are broken

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6
Q

chemical potential energy

A

resting energy that is being stored, when molecular bonds are created and energy is stored in them

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7
Q

isolated system

A

can’t exchange energy with its surroundings

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8
Q

open system

A

exchanges energy with its surroundings

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9
Q

why cells are open systems

A

they absorb light and chemical energy, release heat and metabolic waste

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10
Q

first law of thermodynamics and biology

A

byproducts of cell metabolism increase entropy

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11
Q

free energy change

A

free-energy is what does the work when temperature and pressure are uniform, responsible for spontaneous changes

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12
Q

free energy and reactions

A

in order for the reaction to be spontaneous, the change in free energy must be negative; free energy tells us if a reaction can occur spontaneously this way

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13
Q

exergonic

A

when change in free energy is negative and spontaneous reactions can occur; the change in G is the maximum amount of work the spontaneous reaction can do

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14
Q

endergonic

A

absorbs free energy from the environment; when change in free energy is stored and positive

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15
Q

metabolism and equillibrium

A

living things must always be an open system that is in disequillibrium

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16
Q

cellular work

A

is powered by ATP and the progression of exergonic and endergonic reactions; the hydrolysis of ATP produces heat and proteins use energy to do work

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17
Q

work that proteins can do when given energy from ATP

A

chemical work, transport work, mechanical work

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18
Q

protein chemical work

A

if the change in free energy of the chemical relationship is less than the energy from the ATP, the chemical relationship’s bonds are broken

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19
Q

protein transport work

A

ATP changes the shape of the proteins so it can bind to other molecules,transports solutes through the transport proteins

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20
Q

ATP/ADP cycle

A

starts as ADP, adds a phosphate and produces water; when need energy, breaks bond of third phosphate, releases energy, and becomes ADP again

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21
Q

protein mechanical work

A

ATP changes the shape of the proteins so it can bind to other molecules, makes motor proteins move

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22
Q

role of enzymes

A

speeds up hydrolysis and bonding of chemicals as a catalyst; reusable

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23
Q

activation energy and chemical reactions

A

to break bonds it requires a certain amount of energy called activation energy; frequently the activation energy is absorbed as thermal energy

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24
Q

activation energy and enzymes

A

enzymes lower the amount of activation energy required by making the reaction occur more easily

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25
enzyme specificity
enzymes only react with their designated substrate like a puzzle piece
26
induced fit model
as substrate approaches the enzyme, the enzyme moves around the substrate to make a snug fit and catalyze better
27
how enzymes lower the required activation energy
provides a template for molecules to fit together, stretches the bonds so easier to break, optimal reaction environment
28
how to increase the digestion of substrates with enzymes
must add more enzymes to increase rate (assuming correct pH and temperature)
29
enzymes and temperature/pH
each enzyme has an optimal pH and temperature, outside of that it doesn't do its job well or eventually denatures
30
enzyme cofactors
perform crucial catalyst functions alongside the enzyme
31
enzyme inhibitors
competitive inhibitors look like the substrate and clog the enzyme; noncompetitive inhibitors impede reactions while bound elsewhere to the enzyme
32
allosteric regulation
uses reversible enzyme inhibitors to block enzymes when need to lower the metabolism of a substrate
33
cooperativity of an enzyme
when an enzyme has multiple sites for reactions, when one substrate locks in to a site, more are attracted to the other sites
34
feedback inhibition
when an enzyme is over catalyzing the end product of the catalyst reaction will stay inside the enzyme to block further reactions
35
autotrophs
make own food
36
heterotrophs
consume products made by other organisms
37
mesophyll
the tissue in the interior of the leaf that contains chloroplast
38
stomata
cells on the exterior of the leaf where CO2 and oxygen are exchanged
39
stroma
the inner liquid of the chloroplast, held in by an inner and outer chloroplast membrane
40
thylakoid
membrane system where chlorophyll is embedded, stacks of thylakoids are called grana, and the inside of a thylakoid is hollow called the thylakoid space
41
chlorophyll
found in membrane of thylakoid, green pigment that absorbs light for photosynthesis
42
photosynthesis equation
6CO2 + 6H2O + Light ---> C6H12O2 + 6O2
43
two stages of photosynthesis
light reactions and calvin cycle
44
light reactions
photosystem two and one. splits water to stabilize PSII electrons while H+ powers ATP synthase and PSII electrons stabilize PSII electrons. bonds NADPH. O2 is released
45
calvin cycle
uses energy from ATP and NADPH to take the CO2 and make the organic glucose
46
carbon fixation
when CO2 is used to make an organic molecule
47
light wavelength and light energy
the shorter the wavelength, the higher the energy; violet has the shortest wavelength and red has the highest
48
absorption spectra
show how a pigment absorbs each wavelength
49
action spectrum
shows rate of photosynthesis for different wavelengths; doesn't totally match absorption spectra due to accessory pigments' role; needs spectrophotometer
50
the pigments of plants
chlorphyll a is the primary pigment, chlorophyll b is the accessory pigment, accompanied by carotenoid accessory pigments
51
accessory pigment roles
absorb other wavelengths to photosynthesize, but not as effectively as the primary pigment would
52
structure of a photosystem
chlorophyll absorb light and excite electrons that eventually excite the special pair of chlorophyll a molecules that send electrons to the primary electron acceptor
53
where the light reactions occur
in the photosystems nested in the thylakoid membrane, thylakoid space and stroma
54
where the calvin cycle occurs
the stroma
55
parts of the chloroplast
mesophyll cells: where chloroplasts are; stomata is where water and CO2 are intaked
56
chemiosmosis
the process of H+ protons moving across a gradient to make ATP in photosynthesis and in cellular respiration
57
needed materials for light reactions
water, ADP, chlorophyll A, light, cytochrome complex, ATP synthase, NADP+ reductase, NADP+, protons
58
needed materials for calvin cycle
RuBP, CO2, rubsico enzyme, 9 ATP, 6 NADPH
59
light reactions products
H+, ATP, NADPH, oxygen gas
60
calvin cycle products
one G3P molecule, ADP, NADP+
61
photorespiration
when CO2 stops coming in the leaf and rubisco fixes oxygen gas rather than co2 to start calvin cycle
62
problems with photorespiration
uses ATP instead of making it, decreases output by releasing organic molecules as CO2
63
chemoautotrophs
make own energy from thermal energy, under water near thermal vents
64
examples of photosynthesis autotrophs
bacteria, protists, plants, NOT fungi
65
how water gets to chloropyll
from roots to xylem, through adhesion and cohesion, gets to the vain of leaf
66
how CO2 gets into the cell
the cells on the surface absorb water and buckle to make a hole (aka the stomata) for the CO2 to enter
67
cytochrome complex
carrier proteins for electrons
68
why leaves turn red/brown
chlorophyll stops being made, so the secondary pigments that have always been there are now needed to photosynthesize and red/brown is reflected
69
C3 vs C4
C3 is regular photosynthesis; C4 opens stomata quickly and periodically during the day; photosynthetic layers are closest to veins to be close to water; stores CO as an acid
70
C4 vs CAM
CAM only opens at night and stores CO2 at night so doesn't have to open the stomata, then uses CO2 in light reactions during the day
71
carbon fixation three stages
carbon fixation, reduction, regeneration