Chapter 10 Nucliec Acids Flashcards
(22 cards)
Nucleotides
The building blocks of DNA
Genome
The complete complement of an organisms genetic material
Three components of nucleotides
Phosphate group
Pentose group
Nitrogenous base
What is the complement of 5’ - TTAGCCAT- 3’ in 5,-3,?
ATGGCTAA
In the DNA double helix, complementary base pairs are held together by
Hydrogen bonds
Replication models
Semi conservative
Conservative
Dispersive
Semi conservative
During replication two parental strands separate and serve as template strands
New nucleotides must obey the AT/GC rule
End result two new double helices with same base sequences as original
Replication forks
A replication bubble is formed when the DNA helix opens at an origin of replication
Two forks are formed
Leading and lagging strand
Leading strand Synthesis
A single RNA primer is made at the origin made by primase
The primer is extended with DNA, DNA polymerase attaches nucleotides in a 5’ to 3’ direction as it slides forward
Makes one long molecule
Lagging Strand
Multiple RNA primers are made, not at origin
Direction is opposite to fork movement
Synthesis of DNA is in pieces , Okazaki fragments
Used in DNA synthesis
DNA helicase
Binds to DNA and travels 5’ to 3’ using ATP to separate strand and move fork forward
Wraps around DNA and separates the strands
Used in DNA synthesis
Topoisomerase
Relieves additional coiling ahead of replication fork
Comes and cuts DNA, then put them together again
Used in DNA synthesis
Single strand binding proteins
Keep parental strands open to act as templates
DNA polymerase
Covalently links nucleotides
Breaks a covalent bond to release pyrophisphate (2P)
Provides energy fir polymerization
What statement best describes DNA polymerase?
It is an enzyme required to glue DNA fragments together
Important features of DNA polymerase
- DNA cannot begin DNA synthesis on a bare template strand alone
- DNA polymerase can work only 5’ to 3’
Primase
Makes RNA primer at the origin
A second primer is made at the fork for the lagging strand
Primer removal
RNA primer must be removed and replaced
Both tasked are performed by a special DNA polymerase, DNA polymerase I (in bacteria)
DNA ligase
Used after removal of RNA and its replacement with DNA
Works once on leading strand and over again on lagging strand
Catalyzes the phosphodiester bond between the DNA fragments of the lagging strand
Which is most likely consequence of a deficiency of DNA ligase
Failure of DNA fragments to link into a single continuous strand
Three important issues for DNA polymerase
Speed, fidelity, completeness
Telomeres
Series of short nucleotide sequences repeated at the ends of eukaryotic chromosomes
Enzyme attaches many copies of DNA repeat sequence to the ends of chromosomes
3’ hangover
Cause aging