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Flashcards in Chapter 7 Deck (51):
0

Why won't alleles disappear?

Heterozygotes can "hide" the recessiveness

1

What are three criticisms of Mendel's conclusions?

-seemed to be opposed to most biological observations
-unclear as to whether his observations were consistent with Darwin's theory
-trait frequencies as observed in nature were not consistent with frequencies expected under Mendelian inheritance

2

What did GH Hardy do? (4)

-developed model to predict the population level consequences of Mendelian inheritance
-Showed Punnett was correct
-demonstrated that dominant alleles would not replace recessive alleles over time
-The frequency of an allele neither decreases or increases simply because its recessive or dominant

3

Population genetics

=> provides math description & modilizes evolution process

-Investigates how the genotype frequencies in an offspring population are related to the genotype frequencies in a parental population.

4

Individual versus Population level thinking

Individual thinking: what gametes and offspring are produced, in what frequencies, from a given pair of parents?

Population thinking: how do the characteristics of the population change over time as the result of evolutionary processes?

5

Qualitative prediction

If a trait is beneficial we would expect to see its frequency in the population increase

6

Quantitative prediction

Numerical predictions about evolutionary dynamics

7

Stasis

When genotype frequencies (AA/Aa/aa) or allele frequencies (A or a) stay the same

8

Steady state frequencies

equilibria of our models

9

When is a system in equilibrium?

When the system has reached a state where it does not change in the absence of outside forces or processes acting on it

10

Stable equilibrium conditions (2)

-at this point the system DOES NOT CHANGE
-If perturbed by small amount the system will return to this point

*upside down cup with ball on the bottom

11

Unstable equilibrium conditions (2)

At this point the system DOES NOT change

If perturbed or displaced by some small amount, the
system will move further away from its initial position at rest.

12

Neutral equilibrium conditions (2)

At this point, system does not change

If perturbed by small amount the system will stay in its displaced position, rather than returning to the original position as it would in a stable equilibrium, or moving further away as it would in an unstable equilibrium.

13

Mixed equilibrium conditions (2)

At this point the system does not change

If perturbed to the left or the right, the system will return to its starting point. If perturbed forward or backward, the system will stay in the new displaced position

14

What does the Hardy Weinberg model serve as & what does it tell us about genotype frequencies?

A null hypothesis for population genetics [opposite]

Tells us what happens to genotype frequencies when natural selection and other important drivers of evolutionary change are NOT happening

15

What are the three conclusions if there is an absence of evolutionary processes acting on alleles?

-Frequencies of A1 and A2 do not change over time
-With allele frequencies and random mating it is possible to predict the equilibrium genotype frequencies
-All alleles no matter their initial frequencies will reach Hardy-Weinberg equilibrium in a single generation

16

First and Second Hardy Weinberg assumptions?

- Natural selection is not operating on the trait or traits affected by the locus in question => no natural selection

- Individuals have no preference for others with similar (or dissimilar) genotypes => random mating

17

Third, fourth, and fifth HW assumptions:

-No mutation is occurring

- There is no migration into or out of the population => no new alleles

-Population is infinite in size => no genetic drift

18

What are the 3 possible genotypes of A1 and A2? Sum of genotype frequencies?

A1A1, A1A2, A2,A2 = 1

19

What equilibrium does p2, 2pq, and q2 represent, given allele frequencies p and q?

Stable equilibrium

20

What type of equilibrium are the allele frequencies p and q?

Neutral

21

What frequency should be reached by heterozygous frequency at HW equilibrium?

f[A1A2] = 0.5

22

What is the basic procedure of the HW Model?

1. Experimentally collect frequency of alleles in population
2. Determine genotype frequencies
3. Use genotype frequencies to calculate the actual allele frequencies in population
4. Calculate the expected HW
5. Use chi square test to compare expected to observed for significance

23

What is the whole idea of HW model, and an example?

To be able to tweak an assumption and see their affect.

If mutation is introduced and it fluctuates your data, then you know that's driving your population

24

Selection coeffiecient

Describes the fitness reduction of the light phenotype relative to dark phenotype.

25

How is fitness set up in light and dark phenotypes? What does it mean is s=0 or 0.25?

Fitness of dark type is set to 1
Fitness of light type set to 1-s
If s=0; no selection against alllele
If s=0.25; 25% reduction in fitness

26

Frequency-independent selection & example

Fitness associated with a trait is not directly dependent on the frequency of the trait in a population

Example: pocket mice

27

Directional selection

One allele is consistently favored over the other allele; takes long because it's being masked

28

What if A1 is codominant or dominant to A2?

heterozygotes have selection advantage

29

What if A1 is recessive to A2?

Heterozygotes have same fitness as A2A2 homozygotes

30

Codominant

equal expression

31

Overdominance

heterozygotes has highest fitness

32

Balanced polymorphism

-A stable equilibrium that's polymorphic; allele frequencies will return to their equilibrium values after a perturbation away from equilibrium

33

Balancing selection, and example

selection that leads to balanced polymorphism

*generally rare
*classic example is sickle cell anemia

34

Underdominance

Heterozygote has lower fitness than homozygotes

35

Overdominance and underdominance are very rare, why?

If the allele goes above critical threshold frequency, it goes to fixation
If the allele goes below this frequency, it's lost from the population

36

Why are overdominance and underdominance classified as frequency independent selection?

Fitness of each genotype, and its corresponding phenotype, is constant and independent of the frequencies of genotypes in the population

37

Frequency-Dependent selection

Occurs when the costs and benefits associated with a trait depend on its frequency in the population

38

What is POSITIVE frequency dependent selection? What happens when phenotype is favored and controlled by two alleles at a single locus?

Fitness associated with trait that INCREASES as the frequency of the trait increases in population

-Each phenotype favored once becomes sufficiently common in the population.
-If phenotype controlled at a single locus, one of the two alleles will become fixed and the other will be lost

39

What is NEGATIVE frequency dependent selection? When are phenotypes favored and controlled by two alleles at a single locus?

Fitness associated with trait DECREASED as the frequency of the trait increases in population.

-Each phenotype favored when rare
-If phenotype controlled by two alleles at a single locus, both will be maintained in a balanced polymorphism (form of balancing selection)

40

Example of positive frequency-dependent selection

Flat nail species; The higher the frequency of either coil direction in the population the higher their fitness

41

Example of Negative frequency-dependent selection

Scale-eating cichlid fish (two morphs: right and left handed mouth openings); As one mouth opening became dominant, its prey became aware of protecting that side decreasing the fitness of the most common mouth morphology = maintaining it ~50%

42

Viability selection

Fitness differences that arise because of differences in rates of survival and mortality

43

Fecundity selection

Natural selection operating on the number of offspring produced

44

Semelparous species

Organisms that reproduce once at the end of their lives

45

Mutation; two facts?

Ultimate source of variation

Can change allele frequencies in a population

46

Which acts slower, mutation or selection?

Mutation operate acts slower than selection.

47

How does mutation affect genotype frequencies?

If other HW assumptions are met, the genotype frequencies will always be in standard HW proportions

48

Even if A1 gets favored, why won't it ever get fixed? What will be reached?

A1 although favored will never be fixed because A2 alleles are constantly being generated by mutation. => equilibrium will eventually be reached.

49

Mutation selection balance

Equilibrium state where the action of natural selection to DECREASE the frequency of A2 is exactly balanced by the action of mutation to produce new A2 alleles by mutation from A1

50

Since several human diseases negatively affect fitness, why haven't they been eliminated from population?

Mutation-selection balance