Exam 4- Chapter 10 Flashcards

1
Q

Point mutations

A

alteration of a single pair of nucleotides

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2
Q

insertions

A

slippage in new strand causes addition of a base
shifts reading frame

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3
Q

Deletion

A

slippage in parent strand removes a base
shifts reading frame

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4
Q

Tpes of induced mutations

A

base analogs
DNA modifying agents
Intercalating agents
chemicla mutagens
Physical mutagens

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5
Q

base analogs

A

structurally similar to normal bases
mistakes occur when they are incorporated into polynucleotide chain

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6
Q

DNA modifying agent

A

alter a base causing it to mispair

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7
Q

Chemical mutagens

A

chemicals induce mutations at a higher rate than found spontaneously

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7
Q

Intercalating agents

A

distort DNA to induce single nucleotide pair insertions and deletions

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8
Q

Physical mutagens

A

Ultraviolet light can cause a higher than expected mutation in DNA by forming thymine dimers

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9
Q

Wild-type

A

most prevalent form of a gene

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10
Q

Forward mutation

A

wild type to mutant form
- wildtype is most prevalent

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11
Q

Reversion mutation

A

mutant phenotype to wild-type phenotype

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12
Q

Suppressor mutation

A

An additional mutation occurs somewhere in a sequence, not where the original mutation is, and suppresses the effects of the original

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13
Q

Same side reversion

A

codon is mutated and codes for different amino acid but another mutation happens in same spot and reverses effects

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14
Q

Silent mutation

A

change base sequence of codon but not encoded amino acid

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15
Q

affects of silent mutation

A

The mutation is present but results in the same amino acid

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16
Q

Missense mutation

A

single base substitution that changes a codon for one amino acid into another

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17
Q

Impact of missense- similar properties

A

small impact

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18
Q

impact of missense- different properties

A

large impact
polar to non-polar AA could completely unfold

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19
Q

Nonsense mutation

A

converts sense codon into a stop codon

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20
Q

Impact is dependent on

A

location

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21
Q

Impact of early nonsense mutation

A

huge impact on structure and function

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22
Q

Impact of nonsense mutation at end of sequence

A

little impact

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23
Q

Frameshift mutation

A

results from insertion or deletion of one or two base pairs in coding region of gene

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24
Impact of frameshift
most deleterious
25
frameshift at beginning effect
loss or change of function
26
Frameshift to different stop codon
add or lose AA
27
Other types of mutations not to coding genes
Conditional Auxotrophic mutations to regulatory sequence mutations to tRNA/rRNA
28
Conditional mutation
expressed only under certain environmental conditions
29
Example of conditional mutation
temp sensitive mutations - mutation is ALWAYS there but only see effects at high temps
30
Auxotrophic mutant
unable to make an essential macromolecule has conditional phenotype: can survive if nutrient is supplied
31
phototroph
whild-type strain for auxotrophs
32
Mutations in regulatory sequence
Changes to promoter region Protein may be fine but RNA pol. cant transcribe
33
What happens to RNA polymerase in mutations to regulatory sequence
Might cause RNA pol to not bind Might cause RNA pol to bind too tightly
34
mutations in tRNA and rRNA genes
Protein synthesis is disrupted
35
tRNA mutation that causes structure change
cant bind to A/P site
36
tRNA mutation to stem
cannot add AA
37
rRNA mutation
cant recognize shine-delgarno and cant initiate translation
38
Indirect repair
cut sequence out and resynthesize that area
39
Direct
dont cut out and repair within sequence
40
Types of indirect
Proofreading excision repair - mismatch - nucleotide excision - base excision
41
Types of direct
Photoreactivation Direct repair of alkylated bases
42
proofreading
correction of errors in base pairing made during replication errors corrected by DNA pol3
43
mismatch repair
mismatch correction enzyme scans newly synthesized DNA for mismatched pairs mismatches are removed and replaced by DNA pol and ligase
44
Nucleotide exision repair
active at all times UVrC complex binds and knicks distortion UVrD binds and has helicase activity DNA pol 1 binds and synthesizes DNA ligase seals gaps
45
base excision
activated during lack of itnergrity of H bonds damaged single bases are recognized and removed by DNA molecule uses DNA glycosylase
46
Photoreactivation
directly repair thymine dimers by spliting them using visible light catalyzed by photolyase
47
Direct repair of alkylated bases
pops off functional groups that shouldnt be there
48
recombination repair
Repairs DNA with damage in both strands OR where there is a gap opposite the leison RecA protein removes undamaged DNA and swaps it into gap DNA pol synthesizes new gap where there is undamaged template
49
What does recombination repair require
another copy of undamaged strand happens during replication
50
Carcinogenicity testing
Based on the observation that most carcinogens are also mutagens Ames test
51
Ames test
Uses Salmonella enterica and looks for reversion reversion rate in presence of carcinogen is greater than in absence then mutagen is carcinogenic
52
Screening
looks for changes in phenotype pulls out not only mutant strands but also parent strands
53
Why is screening inefficient
have to keep screening until you find mutatnt cant just pull mutant out
54
Selection
uses growth medium to inhibit microbes lacking the desired gene positive selection
55
replica plating
master plate transfered with velvet negative selection
56
Patch plating
pick colonies from master plate and put them onto grid spots negative selection
57
How SOS response works
RecA protein initiates recombination repair - acts a s a protease destroying LexA represor protein and increaseing production of exision repair - cell replication stops after 40 min: - DNA 4/5 do non-template synthesis in hoeps of a survivable outcome
58
vertical gene transfer
transfer genetic material from parent to offspring
59
Horizontal gene transfer
transfer of genetic material between cells that do not share an ancestor-descendant relationship
60
Why is HGT important for prokaryotes
they do not have fusion of gametes so need another method
61
mechanisms of HGT
conjugation transformation transduction
62
conjugation
direct cell-to-cell contact
63
transformation
uptake of naked genetic info from environment
64
Transduction
uses viruses to exchange genetic info