Final Lab Sections on Biotechnology Flashcards

(42 cards)

1
Q

What food called when they are produced from crop plants that have had their genetic makeup altered to produce valuable or desirable traits that would not naturally occur?

A
Genetically Modified (GM) 
or
Genetically Engineered (GE)
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2
Q

What is the rearrangement of DNA sequences within an organism and/or the methods employed to combine genes from different organisms?

A

recombinant DNA technology

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3
Q

What are plants/organisms in which DNA from one organism is introduced into and expressed in another organism?

A

Transgenic organisms

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4
Q

What are some examples of GM plant products?

A
Roundup Ready soybeans
virus resistant papaya
corn
wheat
rice
animal feed
medicines
vaccines
fibers
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5
Q

Name 4 potential benefits of genetic modification.

A
  1. increased disease resistance
  2. productivity (biomass)
  3. hardiness
  4. feed nutritional value
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6
Q

Why are some opposed to genetically modified crops?

A

Unknown, unclear and potential risks that are associated with relatively new technologies.

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7
Q

What are we using in lab to test for the presence of transgenes?

A

Bio-Rad GMO Investigator Kit

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8
Q

What is being used to determine if the isolated DNA from the samples contains specific transgenes?

A

Polymerase Chain Reaction (PCR)

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9
Q

What are the two sequences we are testing for (that are found in about 85% of all transgenic plants)?

A
  1. A promotor from the Cauliflower Mosaic Virus (CaMV 35s)

2. A terminator gene from Agrobacterium tumefaciens called nopaline synthase (NOS)

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10
Q

What is a promoter sequence?

A

A sequence that is required to initiate or activate transcription of a transgene at a high level in plant cells.

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11
Q

Why are viral promoters desirable to use?

A

Because they are particularly strong.

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12
Q

What is a terminator sequence?

A

a sequence that is required to stop, or inactivate, transcription for a specific transgene.

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13
Q

Who invented the Polymerase Chain Reaction (PCR)?

A

Kary Mullis in 1983

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14
Q

What is the Polymerase Chain Reaction (PCR)?

A

A process in which a specific DNA region can be copied continuously, or amplified in number of copies, under a particular set of conditions.

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15
Q

How many copies can PCR produce?

A

After 25 cycles, over 33 million.
After 50 cycles, over 66 million.
Billions of copies of a single DNA sequence within a few hours.

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16
Q

What 5 components are required to make PCR happen?

A
  1. Template DNA
  2. Taq Polymerase
  3. PCR Buffer
  4. Nucleotides
  5. Primers
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17
Q

What is template DNA?

A

The DNA that you are testing to determine whether or not it contains the sequences in which you are interested.

18
Q

What is Taq Polymerase?

A

An enzyme capable of synthesizing new DNA strands, isolated from the heat-loving bacterium Thermus aquaticus.

19
Q

What is a PCR buffer?

A

Taq polymerase requires a specific buffer in which it can perform its activity.

20
Q

What are nucleotides and which ones are we using?

A

The building blocks of DNA

Adenine, Thymine, Cytosine, Guanine

21
Q

What are primers?

A

Single-stranded DNA molecules that are usually 16-30 nucleotides long and are mechanically synthesized by different companies.

22
Q

How do primers work?

A

When attempting to amplify a particular DNA sequence by PCR, individual primers are generated that precisely match with the ends of that sequence.

23
Q

What is a primer’s function?

A

Their function in the reaction is to anneal (bind) to the DNA sequences to which they are complimentary and serve as a starting point for the synthesis of new DNA strands by Taq Polymerase.

24
Q

How many primer sequences are we using?

A

4: 2 for the promoter and 2 for the terminator.

25
What is the machine that we will use to run our reactions once everything is put together?
Thermocycler
26
What DNA is extracted from the plant and food mater?
combined nuclear, chloroplast, and mitochondrial
27
What are the 3 steps for PCR reactions?
1. Denaturation 2. Primer Annealing 3. Extension
28
What is the Denaturation stage?
At 94 degrees, the double stranded template DNA molecule separates (or melts, denatures) into two single-stranded molecules.
29
What is the Primer Annealing stage?
The reaction is cooled down to about 60 degrees, where bonds are continuously reformed between single-stranded primers and the single-stranded template DNA sequence to which they are complimentary. Taq polymerase attaches at the 3' ends of the bound primer sequence.
30
What is the Extension stage?
At 72 degrees, the polymerase can work efficiently to add nucleotides that are complementary to the DNA template at the 3' ends of the primer to produce a complementary strand that was elongated in a 5' to 3' direction.
31
How many times are the PCR steps repeated?
30-40 times, in cycles, with a final long extension step at the end to ensure the DNA strands have been completely extended.
32
How was it determined if the sequences of interest have been amplified?
The PCR products were resolved by agarose gel electrophoresis and visualized.
33
What is Electrophoresis?
A technique used to separate charged molecules, like DNA, by size.
34
What does DNA do in Electrophoresis?
DNA is a negatively charged molecule that will move from the negative cathode (-) through the gel toward the positive (+) anode.
35
Which molecules will migrate further in Electrophoresis?
Smaller molecules will migrate further than larger molecules. Any differences in sizes of the DNA will be apparent as distinct bands.
36
What is Agarose?
Extracted from seaweed, it is a chain of sugar molecules that forms a gel-like matrix. Purfified agarose is in a powdered form and will dissolve only in a boiling liquid.
37
What buffer is used with the agarose?
A salt buffer that helps maintain the integrity of the DNA as it travels through the gel.
38
What is used to poor the agarose solution so it will assume the shape we want as it solidifies?
Casting tray with a comb inserted to create small wells into which the samples are loaded.
39
What is the special stain we are adding to the agar mixture?
GelRed from Biotium
40
What does the GelRed do?
Adheres to the DNA fragments which will fluoresce under UV light.
41
How will the size of the bands be determined?
By comparing them to the sizes of the bands in the molecular weight ruler (MWR).
42
What is the Molecular Weight Ruler also called?
DNA Ladder