Mcat 3 Flashcards
How ligase enzymes work?
Catalyzes addition or synthesis reaction between two molecules by coupling them with the hydrolysis of energy rich bonds such as those between ATP phosphate group.
What is receptor enzymes?
Are transmembrane proteins that catalyzes chemical reactions in response to ligand binding. Upon ligand binding to the extracellular domain of the proteins conformational change occurs that allows the intracellular domain to become catalytically active. Antagonists are molecule that bind to receptor proteins and reduce the overall response to the normal ligand (agonist), either through competition for the same binding site or by other means.
Receptor tyrosine kinases are one of most common type of receptor enzyme that dimerize and phosphorylation each other when ligands bind.
How hypothesis test is performed?
It assess the validity of a claim made about 2 groups.
H0- theorizes that there is no difference between these 2 groups
Ha- rivals the null by claiming that a difference does exist.
P values evaluate how well the data support Ho, assuming Ho is true. Statistical significance is determined by p value is equal or less than alpha, the predetermined level of significance. In general alpha is set to equal to 0.05
What is conformational stability of a protein? How it can be measured?
Is it’s ability to maintain its 3D folded forms and can be measure by the melting temperature Tm, at which half of the proteins in solution are folded and half are denatured. Conformational stability doesn’t necessarily affect protein function as long as the protein is maintained at a temperature that allows proper folding
What is hills coefficient numbers for positive, negative and no cooperativity?
n>1 positive cooperativity and have sigmoidal dependence on substrate concentration.
n=1 no cooperativity hyperbolic shape
n is between 0-1: negative cooperativity even more hyperboltic shape.
Hills cooperativity is always positive value
Derivation of lineweaver burk equation from Michaelis- Menten equation?
Michaelis- Menten equation: Vo=Vmax [S]\Km+[S]
Reciprocal equation: 1/Vo=km+[S]/Vmax [S]\
Lineweaver burk equation: 1/Vo=km/Vmax 1/[S] + 1/Vmax
Generic equation: y=mx+b
** Michaelis Menten equation is also: Vo=kcat[E][S]/km+[S]
Vmax=kcat[E]
What Upward shifts in the y intercept and leftshift in x intercept corresponds to on lineweaver burk plot!
Decreased Vmax and decreased km
What bond proteases break?
Peptide bonds in proteins via hydrolysis reaction. During peptide hydrolysis a water molecule is used to cleave CN bond in the peptide linkage
What is the formula for rate constant and enzymes change the rate constant?
K=Ae^-Ea/RT
Enzyme increases the reaction rate in both forward and reverse directions
What are the three assumption Michaelis Menten equation relies on?
- The free ligand approximation- [S] is constant during the reaction. It is only true during the initial phase of the reaction.
Substrate can also be depleted when it binds to the enzyme to form enzyme substrate complex . To fix that the total concentration of enzyme in the solution should be smaller than any substrate concentration tested. - the steady state Sumption - states that the concentration of ES remains consistent over the course of the reaction. once concentration of substrate becomes significantly depleted, ES levels decrease and the reaction slows.
- Irreversibility assumption-
States that reaction proceeds only in the forward direction and product does not get converted back to substrate. But once product accumulates the reverse reaction occurs at non-negligible levels and further slow the net rate of product formation
What is attribution theory!
It suggests that individuals tend to explain behavior their own or that of others as resulting from internal or external causes.
Internal or dispositional attribution’s describe behavior to personal factors such as personality ability or attitude. The external or situational attributions ascribe behavior to environmental factors such as task difficulty, presence of others or lack
How enzymatic reactions that involve more than one substrate form?
2 most common mechanisms:
1. Formation of ternary complex which can form in a random order or specific order
2. Ping pong mechanism - always ordered. One substrate binds to enzyme first and reacts, changing the structure of the enzyme itself. This substrate then leaves the active site, allowing 2nd substrate to enter and react, restoring the enzyme to its original form.
Which inhibitors bind to enzyme and enzyme substrate complex with equal affinity?
Noncompetitive inhibitors
What shortens and what doesn’t during muscle contraction?
Shortens:
1. I band - consists of only actin ( thin) filament.
2. H band- consists of only myosin (thick) filaments
Doesn’t change:
A band - which consists of both actin and myosin filament, marks the length of the myosin filaments.
Other lines that is on the sacromeres;
M line - marked the center of each sacromere
Z line - line delineates the boundary between each sarcomere
What are the main four tissue types in human body?
- Epithelial tissue - lines surfaces, protection, absorption, filtration and secretion. Eg skin, lining of hollow organs (digestive tract, trachea)
- Muscle tissue - voluntary and involuntary (cardiac and smooth muscle) movement. Eg skeletal, cardiac. Smooth
- Connective tissue - support and protection, attachment tissues, insulation, thermoregulation, transport eg bone, blood, fat, tendons/ligaments, cartilage
- Nervous tissue- transmission and receipt of electrical signal, response to internal and external stimuli. Examples are brain spinal cord and nerves
Is muscle tissue is a connective tissue?
All the connective tissue comes into contact with muscle tissue, muscle is not considered to be a type of connective tissue
What is sarcoplasmic reticulum
Is specialized endoplasmic reticulum found in skeletal muscle fibers. It stores Ca2+ necessary for skeletal muscle contraction to occur. A specific Ca channel permits diffusion of Ca out of the SR, and a specific ATPase pumps Ca from the cytosol back into the SR
What is pyruvate dehydrogenase complex and how it works?
Is an enzyme composed of a 3 subunits E1, E2, E3. It catalyzes the oxidative decarboxylation of pyruvate to form acetyl CoA, along with the reduction of NAD+ to NADH. During this process, electrons passed from one subunit to next until they can be transferred to NAD+. This transfer is facilitated in part by the cofactor lipoic acid.
How multiple polypeptide chains (subunits) of proteins can be separated in reducing SDS gel?
In their native form, many proteins consist of multiple polypeptide chains (subunits) and are know as multimers (eg dimers; trimers, etc). Reducing SDS gel separate multimers subunits by size. Identical subunits migrate the same distance and form a single band whereas distinct subunits migrate different the distances and form separate bands.
How is western blot works?
Western blot analysis is a technique used to detect the presence of a specific proteins. It is performed by gel electrophoresis of the protein of interest, followed by a transfer to protein binding membrane and intubation with antibodies specific to the protein of interest. Primary antibody or a label secondary antibody is then detected by florescence or chemiluminescence.
What is an anomeric carbon
The carbon that has two bonds to oxygen
What is glycosidic bond
Is a bond between anomeric carbon of a carbohydrate and any other biological molecule including proteins lipids nucleotides and other carbohydrates. Single carbohydrate can participate in multiple glycosidic bonds, one through its own and anomeric carbon (the carbon carbon that is bonded to two oxygen) and others through bonds from its hydroxyl groups to the anomeric carbon of other sugars.
What is sphingolipids?
They are a structural lipids that help influence the fluidity and curvature of biological membrane. It has hydrolyzable bond and nonhydrozible bond. Has one single fatty acid acyl chain with hydrolyzable head.
The long hydrocarbon chain of the sphingosine head group cannot be readily hydrolyzed and sphingolipids are not primary means of energy storage. They
What is liver and platelets do together?
Platelets form a plug at the site where a blood vessel has been damaged. Blood clotting factors that have been synthesized in the liver in the inactive form then participate in a cascade that that leads to blood clot