Pharmacogenetics Flashcards

(85 cards)

1
Q

this drug was given to patients to tx TB and we saw initial neurological side effects

A

isoniazid

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2
Q

What detoxifies isoniazid?

A

N-acetyltransferase-2

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3
Q

Type of inheritance for NAT-2

A

autosomal recessive

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4
Q

inheritance pattern for slow acetylators are ______ for slow allele
Fast acetylators have ________copies of fast allele
-on NAT-2

A

homozygous

1 or 2 copies

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5
Q

People suffered severe hypotension following administration of the anti-hypertensive debrisoquine d/t

A

CYP2D6 Polymorphism

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6
Q

Poor metabolizer of CYP2D6 inheritance was:
w/ mutant allele frequency of:
and a poor metabolizer frequency in the population of:

A

autosomal gene, (75 variants!!!)
30%
2-10%

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7
Q

How do we get ultrafast 2D6 metabolizer

A

up to 13 copies of the gene

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8
Q

What is our metabolite of debrisoquine

A

measure 4-OH DB

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9
Q

____ variants of 2D6 account for >90% of the poor metabolizers, making them excellent screeing targets

A

7

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10
Q

heterozygotes for poor/normal metabolizer of 2D6 are:

A

functionally reduced

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11
Q

how many copies of poor metabolizer do you need to express that phenotype of 2D6?

A

2 copies of poor metabolizer allele

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12
Q

Most antiD’s are handled by which CYP?

A

2D6

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13
Q

2D6 will both:

A

activate and inactivate the drug

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14
Q

2D6 handles what % of all drugs?

A

25%

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15
Q

Patient is put on anti-D with known 2D6 activation for metabolism of drug…. w/in 1-2 weeks patient complains of severe side effects, why?

A

patient is POOR metabolizer, and is most likely CYP2D6 poor metabolizer homologous thus is building up a lot of drug right away

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16
Q

This CYP polymorphism for poor metabolism of mephenytoin

A

2C19

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17
Q

2C19 homo.poor.met present in what % population

A

3-20%

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18
Q

CYP 2C19 responsible for metabolism of this anti-platelet drug
Does it activate it or break it down

A

Clopidogrel

Activates it

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19
Q

CYP 2C19 responsible for metabolism of this proton pump inhibitor

A

omeprazole

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20
Q

CYP 2C19 responsible for metabolism of this anti-convulsant

A

phenytoin

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21
Q

How can being a poor metabolizer of CYPC219 be of benefit when taking omeprazole

A

bc will alter response of proton pump inhibition and poor metabolizers have higher drug levels which correlates with increased gastric pH and higher cure rates

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22
Q

When would be a good time to use Clopidogrel?

A

to inhibit platelet aggregation

  • cardiac cath
  • CV stent
  • Post MI
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23
Q

Those with even one slow allele (for CYP2C19) have less active drug and >50% increase in
_____ and ______ when taking clopidogrel

A

M.I. and stroke

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24
Q

What is a complication of taking aspirin and clopidogrel post MI?

A

Patients are often prescribed a PPI to help with reflux. The PPI is often omeprazole which uses CYP2C19 as does clopidogrel (anti-coAg) and the two drugs will compete with each other
–higher rate of death and reoccurance of MI if you take the two together

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25
What is key for the poor metabolizer phenotype of CYP2C9
2 low activity alleles | 2C9*2 and 2C9*3
26
Together *2 and/or *3 are in up to what % of patients
31%
27
CYP polymorphism that will impact metabolism of Warfarin
2C9
28
Warfarin functions as
anti-coagulant
29
consequence of excessive warfarin? | not enough?
excessive bleeding | excessive clotting and could lead to stroke
30
benefits of genetic testing for 2C9
good for warfarin dosing - prevents 85,000 serious bleeding events - prevents 17,000 strokes
31
S-warfarin enatriomer is cleared by:
2C9
32
2C9*2 and 2C9*3 polymorphisms result in: - clearance? - half-life? - maintenance dose? - increased risk of ? - takes _____ long to achieve stable anti-coag
``` reduced clearance increase 1/2 life lower maintenance dose increased risk of bleeding takes 2xs as long ```
33
What else effects Warfarin dose besides 2C9?
VKORC1
34
What is VKORC1
subunit of Vit K epoxide reductase complex
35
What is our key protein to modify clot factors II, VII, IX, X
VKORC1
36
How does warfarin affect VKORC1?
inhibits activity of the complex--it's a vitamin K antagonist thus decreases maturation of clotting factors
37
HOw many SNPS are identified for VKORC1? and how many are commn?
28 | 10
38
Which haplotypes result in a LOW warfarin dose when it comes to VKORC1 polymorphisms? What claude are they in?
H1 and H2 | Claude A
39
Which VKORC1 haplos need a HIGH dose of warfarin? | What claude is that?
H7/8/9 | Claude B
40
polymorphism here results in variant response to succinycholine
Pseudocholinesterase
41
succinycholine used for
surgical muscle relaxant that works for 5 minutes after dose is stopped
42
What happens if you are given succinycholine and you have a pseudocholinesterase polymorphism?
will experience apnea and paralysis for 2-3 hrs and increase susceptibility to insecticides and cocaine toxicity
43
What variants of pseudocholinesterase will polymorphism reduce activity in?
- 30-90% decreased cholinesterase activity | - liver and plasma have decreased butyrylcholinesterase activity
44
Presents as increased risk for life-threatening bone marrow suppression in cancer patients treated with thiopurine drugs (e.g. 6-mercaptopurine, 6-MP)
TPMT polymorphism
45
What causes TPMT polymorphism
Due to variants with decreased activity of thiopurine methyltransferase (TPMT)
46
low activity allele has____SNPs in the TPMT gene
2
47
TPMT allele frequency: • 0.3% are________ for low activity allele • 11% _________
homozygous | heterozygous (1 normal and 1 low activity allele)
48
What are the toxic effects of 6-MP
goes down HGPRT path and will inhibit purine synthesis and results in 6-thioguinine NTs misincorporated into DNA and RNA
49
What happens to normal patients that receive 6-MP?
they use their TMPT to inactivate alot of the 6-MP into 6-methyl-MP which is the inactive form while a little will disrupt DNA
50
The more abnormal or low activity allele TMPT alleles you have (0-1-2) the higher risk you are for?
bone marrow suppresion
51
If you have a normal/normal genotype (alleles) of TMPT what is your phenotype?
normal risk for bone marrow suppression from 6-MP
52
If you have normal/slow TMPT genotype, what is your phenotype?
elevated risk of marrow suppresion from 6-MP
53
If you have slow/slow TMPT genotype, what is your pheno?
High risk of marrow suppression from 6-MP
54
S-warfarin enatriomer is cleared by:
2C9
55
2C9*2 and 2C9*3 polymorphisms result in: - clearance? - half-life? - maintenance dose? - increased risk of ? - takes _____ long to achieve stable anti-coag
``` reduced clearance increase 1/2 life lower maintenance dose increased risk of bleeding takes 2xs as long ```
56
What else effects Warfarin dose besides 2C9?
VKORC1
57
What is VKORC1
subunit of Vit K epoxide reductase complex
58
What is our key protein to modify clot factors II, VII, IX, X
VKORC1
59
How does warfarin affect VKORC1?
inhibits activity of the complex--it's a vitamin K antagonist thus decreases maturation of clotting factors
60
HOw many SNPS are identified for VKORC1? and how many are commn?
28 | 10
61
Which haplotypes result in a LOW warfarin dose when it comes to VKORC1 polymorphisms? What claude are they in?
H1 and H2 | Claude A
62
Which VKORC1 haplos need a HIGH dose of warfarin? | What claude is that?
H7/8/9 | Claude B
63
polymorphism here results in variant response to succinycholine
Pseudocholinesterase
64
succinycholine used for
surgical muscle relaxant that works for 5 minutes after dose is stopped
65
What happens if you are given succinycholine and you have a pseudocholinesterase polymorphism?
will experience apnea and paralysis for 2-3 hrs and increase susceptibility to insecticides and cocaine toxicity
66
What variants of pseudocholinesterase will polymorphism reduce activity in?
- 30-90% decreased cholinesterase activity | - liver and plasma have decreased butyrylcholinesterase activity
67
Presents as increased risk for life-threatening bone marrow suppression in cancer patients treated with thiopurine drugs (e.g. 6-mercaptopurine, 6-MP)
TPMT polymorphism
68
What causes TPMT polymorphism
Due to variants with decreased activity of thiopurine methyltransferase (TPMT)
69
low activity allele has____SNPs in the TPMT gene
2
70
TPMT allele frequency: • 0.3% are________ for low activity allele • 11% _________
homozygous | heterozygous (1 normal and 1 low activity allele)
71
What are the toxic effects of 6-MP
goes down HGPRT path and will inhibit purine synthesis and results in 6-thioguinine NTs misincorporated into DNA and RNA
72
What happens to normal patients that receive 6-MP?
they use their TMPT to inactivate alot of the 6-MP into 6-methyl-MP which is the inactive form while a little will disrupt DNA
73
The more abnormal or low activity allele TMPT alleles you have (0-1-2) the higher risk you are for?
bone marrow suppresion
74
If you have a normal/normal genotype (alleles) of TMPT what is your phenotype?
normal risk for bone marrow suppression from 6-MP
75
If you have normal/slow TMPT genotype, what is your phenotype?
elevated risk of marrow suppresion from 6-MP
76
If you have slow/slow TMPT genotype, what is your pheno?
High risk of marrow suppression from 6-MP
77
How do Pgp (MDR-1) polymorphs affect digoxin uptake in gut?
get increased net uptake to digoxin
78
Digoxin is a
cardiac glycoside
79
D/t digoxin's narrow therapetutic windonw, polymorphism here can lead to toxicity
Pgp or MDR-1
80
Patients with abnormal Pgp don't _____as much drug and end up_______
efflux | absorbing more==== toxicity
81
Pgp polymporphism effects drug _____ | and result in _______ levels of PgP protein
absorption | decreased levels of Pgp protein
82
Impact of low expression TT Pgp allele: On cardiac glycoside digoxin results ________ drug concentration _________toxicity
increased | increaed
83
Impact of low expression TT Pgp allele: On anti-convulsant phenytoin results ________ drug concentration _________side effects
increased | increaesd
84
Impact of low expression TT Pgp allele: On anti-D nortripyline results ________ drug concentration _________side effects
increased | increased side effects
85
Impact of low expression TT Pgp allele: On anti-HIV results ________ drug concentration _________response to therapy
increased | better response to therapy