Unit III week 1 Flashcards
Categorization of 20 Amino Acids
5 methods to do this
1) Acidic or basic
2) Polar or nonpolar
3) Ability to synthesize or not
4) Specific chemical constituents
5) Use in energy synthesis
Essential vs. non-essential vs. conditionally essential AAs
Essential: cannot be synthesized by body, obtained from diet
Non-essential: can be synthesized from other amino acids
Conditionally essential: can be made by the body, but capacity for their synthesis is limited (especially in state of high consumption - e.g. illness)
Specific chemical constituents in AAs can be… (4)
Sulfur containing AAs
AAs with nitrogen in side chain (involved in N transport)
Branched amino acids
Aromatic amino acids (precursors for NTs and hormones)
How are proteins broken down in the gut?
GI tract → Peptidases: activated in gut lumen
Different specificities for specific types of peptide bonds
Sequentially break down long peptide chains into component AAs → absorbed and enter circulation
How are proteins broken down in tissues? (2 ways)
protein within cells also need to be broken down
1) Ubiquitination: targets proteins for degradation in proteasomes
2) Degradation in lysosomes
Amino acids contain a _______ group.
This means it must first be removed before use as a precursor for ___________.
This means it must be added before _______ is made from a carbon skeleton.
NH2
gluconeogenesis
Amino acid
Transamination reactions:
1) L-Amino acid donates NH3 to ________ –> ________ + ___________
catalyzed by ___________
2) Ammonia released as NH3 with regeneration of _________ –> _________
(bidirectional depending on substrate / acceptor availability)
NO production of anything, just shuttling something
1) AA donates NH3 to a-ketoglutarate → L glutamate + a-keto acid
Catalyzed by aminotransferase
2) Ammonia released as NH3 with regeneration of a-ketoglutarate
→ Urea cycle
Urea cycle:
1) NH3 –> ___________
catalyzed by ____________
NH3 → carbamoyl phosphate
Catalyzed by carbamoyl phosphate synthase 1
*Key regulated step in protein catabolism
Urea cycle:
2) Carbamoyl phosphate + __________ –> _________
Carbamoyl phosphate + NH3 (from aspartate) → urea
Urea: marker of AA catabolism and oxidation
Glutamine
nitrogen containing AA, accepts nitrogen from other AAs in peripheral tissues and carries it to liver/kidney
→ donates N to glutamate
→ a-ketoglutarate + NH3
Glutamine donates N to _________
Glutamate –> _________ + ________
This reaction is catalyzed by __________
glutamate
Glutamate –> a-ketoglutarate + NH3
catalyzed by glutamate dehydrogenase
Second key regulated step
Two key regulated steps of urea cycle:
1) NH3 → carbamoyl phosphate
Catalyzed by carbamoyl phosphate synthase 1
2) Glutamate → a-ketoglutarate catalyzed by glutamate dehydrogenase
Sulfur containing amino acids (2)
cysteine (non-essential AA)
methionine (essential AA)
Cysteine
can form disulfide bridges (change protein conformation)
-SH group
unessential amino acid
Glutathione (GSH)
highly soluble tripeptide that contains cysteine
1) Redox buffer (SH buffer) that maintains proteins in reduced forms (EX - reduces Fe3+ → Fe2+)
2) ROS protection: reduces hydrogen peroxide (H2O2) → H2O
3) Cofactor for several enzymes
4) uses Cys to control redox potential via GSH ← → GSSG
A-adenosylmethionine (SAM)
Met used to produce SAM (produced during first step of methionine degradation)
- energy source for some biochemical reactions and important methyl donor
- Precursor for homocysteine (B1 and folate metabolism)
- SAM → S-adenosylhomocysteine (SAH)
Tetrahydrofolate
important one carbon methyl transfer reactions
Ring structure on side chains of what AAs? (3)
These are precursors for what important molecules? (7)
tryptophan, phenylalanine, tyrosine
Precursors for serotonin, niacin, dopamine, NE, epinephrine, tetrahydrobiopterin, thyroid hormone
Collagen
formation occurs via posttranslational modification from what 2 enzymes?
These reactions are _______ dependent
most abundant protein in human body, forms triple stranded helix
1) Prolyl hydroxylase
2) Lysyl hydroxylase
Vitamin C dependent
Hydroxyproline (Hyp)
-use?
___________ converts _____ to Hyp
used in collagen for H-bonding → increase collagen strength
Prolyl hydroxylase converts Pro to Hyp
Hydroxylysine (Hyl)
-use?
___________ converts _____ to Hyl
used in collagen for interchain cross-links
Lysyl hydroxylase converts Lys to Hyl
Gamma-carboxyglutamate (Gla)
-use?
_________ converts ______ –> ______
This reaction is _______ dependent
used to target proteins to membranes via Ca chelation
Glutamyl carboxylase converts Glu → Gla (vitamin K dependent)
Scurvy
both prolyl hydroxylase and lysyl hydroxylase rely on Vit-C (ascorbate) as a coenzyme
No Vit C → scurvy (Reduced collagen strength)
Vitamin C
cofactor for prolyl hydroxylase and lysyl hydroxylase enzymes used in collagen synthesis and strengthening