Week 2 Flashcards
(326 cards)
For proteins using ER dependent trafficking what signal sequence is required to send to lysosome?
- Signal peptide
- Mannose 6 phosphate
For proteins using ER dependent trafficking, what signal sequence is required for targeting destination to ER membrane?
Signal peptide only
Proteins are synthesized on bound ribosomes. What are the three final destination options?
Lysosome
Secretion from the cell
Plasma Membrane
In order for the nascent polypeptide to get from the cell cytosol to the ER, what is required?
- Signal recognition protein (SRP) must bind with signal peptide of the growing polypeptide & ribosome
- This will d/c translation
- The unit will dock to the SRP receptor and place for positioning to enter the RER
- Polypeptide will enter RER membrane and SRP leaves for reuse
What comprises an SRP?
What is an SRP?
- Protein & RNA
- SRP = Signal recognition protein that allows nascent polypeptides into the RER for protein trafficking
Once a polypeptide is trafficked into the ER lumen, what three modifications are made?
- Protein folding
- Formation of S-S bonds
- N-Linked Glycosylation
Once a polypeptide is trafficked into the ER lumen, describe which peptides will be glycosylated?
Glycosylation at Asn
- If poly peptide has the sequence Asn-X-Ser or Asn-X-Thr, the carbohydrate will be transferred to an amino acid within the protein
- note: “x” is any peptide sequence. Only the first and last AA matter for this to occur
Once a polypeptide is trafficked into the ER lumen, describe what is necessary for protein folding
Need chaperone proteins and ATP
What are heat shock proteins?
- A type of chaperone protein including HSP70 and HSP90 to help with protein folding in the ER
- They bind ATP and possess ATPase activity
What is HSP60?
Chaperonin
A protein involved in protein folding that occurs in the ER lumen
What are Calnexin and BiP?
Chaperone proteins that are involved in protein folding in the ER lumen during ER dependent protein trafficking
What happens if proteins are misfolded during ER dependent protein trafficking?
They are labeled with ubiquitin and digested by proteasomes
________________ ___________________ is a disorder wherein Phe at position 508 is deleted. This causes improper protein folding and post-translational processing of oligosaccharide chains. The misfolded proteins are then marked with ubiquitin and degraded by proteosomes.
Cystic Fibrosis
What are three modifications made to proteins in the golgi?
Glycosylation, phosphorylation, Sulfation
T/F: The only three modifications made to protein in the Golgi are glycosylation, phosphorylation, and sulfation.
False, proteins can undergo proteolysis
Describe the steps of protein mobilization from the Golgi to lysosomes
- Second signal sequence
- Clathrin will make vesicles to traffic proteins via endosomes
- Low pH will breakdown the clathrin coat and will be delivered to lysosome
What protein coat is required to send proteins from the golgi to lysosome?
Clathrin coat
What deficiency is involved in I-cell disease?
GlcNac-1-phosphotransferase, enzyme that makes clathrin is not present so proteins cannot be moved to endosome then lysosomes
Describe the movement of proteins moving through the ER which are destined to stay in the membrane
Second signal sequence to direct the protein is built into the protein
- When moving through the ER, the stop-transfer sequence will ensure the protein stays in the membrane via translocator
Proteins can use ER independent trafficking. Describe how cytosolic proteins get to their destination
There is a specific sequence which informs the protein to move to the cytosol
T/F: Proteins using independent ER trafficking do not need a second sequence
True, there is a specific sequence in the protein to instruct where the protein will move
Collagen, Elastin, and Fibronectin are all secreted out of the cell via _______________ secretion
Constitutive
_____________, ______________, ___________, _____________ are all secreted out of the cell via Regulated secretion
Insulin, Glucagon, ACh, Glycine
Proteins destined for remain in the cytosol or to function in the nucleus, mitochondria, or peroxisomes are synthesized on ___________ __________________.
Free ribosomes