Chapter 7 Flashcards

(37 cards)

1
Q

What are the possible arrangements of the bacterial genome?

A

Circular chromosome, linear chromosome, multiple chromosomes, and presence of plasmids.

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2
Q

What is vertical transmission?

A

Genetic material passed from parent to offspring during cell division.

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3
Q

What is horizontal transmission?

A

Genetic material transferred between unrelated bacteria through transformation, transduction, or conjugation.

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4
Q

What are structural genes?

A

Genes that encode functional proteins.

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5
Q

What are DNA control sequences?

A

Sequences that regulate gene expression and do not encode proteins (e.g., promoters, operators).

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6
Q

What is conjugation?

A

A process where one bacterium transfers DNA (often a plasmid) to another through direct cell-to-cell contact via a pilus.

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7
Q

How does non-coding DNA differ in eukaryotes and prokaryotes?

A

Eukaryotes have a higher percentage of non-coding DNA; prokaryotes have minimal non-coding DNA.

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8
Q

What is a gene?

A

A sequence of DNA that encodes a functional product.

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9
Q

What is an operon?

A

A cluster of genes transcribed as a single mRNA, under the control of a single promoter (e.g., lac operon).

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10
Q

What is a regulon?

A

A collection of operons regulated by the same regulatory protein.

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11
Q

What is the structure of DNA?

A

Made of nucleotides (sugar, phosphate, nitrogenous base) with base pairs A-T and G-C.

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12
Q

What are the differences between RNA and DNA?

A

RNA is single-stranded, has ribose sugar, and uses uracil (U) instead of thymine (T).

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13
Q

What is the antiparallel nature of DNA?

A

The two DNA strands run in opposite directions: one 5’ → 3’, the other 3’ → 5’.

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14
Q

What stabilizes DNA besides hydrogen bonds?

A

Base stacking interactions (Van der Waals forces) between nitrogenous bases.

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15
Q

How do proteins contact nucleotide bases?

A

Proteins recognize specific sequences in the major groove of the DNA helix.

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16
Q

What is DNA denaturation?

A

Separation of double-stranded DNA into single strands, reversible by cooling.

17
Q

What is DNA supercoiling?

A

DNA becomes supercoiled to compact the genome, controlled by topoisomerases.

18
Q

What is localized supercoiling relaxation?

A

Loops in bacterial chromosomes can relax independently without affecting others.

19
Q

What type of supercoiling occurs in bacteria?

A

Negative supercoiling to make DNA easier to unwind for replication and transcription.

20
Q

What are the two types of topoisomerases?

A

Type I relaxes supercoiling by nicking a single strand; Type II introduces or removes supercoils using ATP.

21
Q

How does supercoiling in thermophiles differ?

A

Positive supercoiling helps stabilize DNA at high temperatures.

22
Q

Why is DNA gyrase a good antibiotic target?

A

Inhibiting DNA gyrase prevents supercoiling, blocking DNA replication.

23
Q

What is semiconservative replication?

A

Each new DNA molecule consists of one original strand and one newly synthesized strand.

24
Q

What is a replication fork?

A

The site where DNA is unwound and replication occurs.

25
In which direction is DNA synthesized?
DNA is synthesized 5’ to 3’ by DNA polymerase.
26
What is the difference between the leading strand and lagging strand?
Leading strand is synthesized continuously; lagging strand is synthesized discontinuously in Okazaki fragments.
27
What are the three parts of DNA replication?
Initiation, elongation, and termination.
28
What is the role of DnaA in DNA replication?
DnaA binds to oriC, causing DNA to unwind and recruit helicase.
29
What is the function of DNA polymerase III?
Main enzyme for DNA synthesis.
30
What is the role of methylation in DNA replication?
Methylation marks old DNA strands for mismatch repair and controls replication initiation timing.
31
What is a plasmid?
Small, circular extrachromosomal DNA found in bacteria, archaea, and some eukaryotes.
32
How is plasmid replication linked to chromosome replication?
Some plasmids replicate with the bacterial chromosome, others replicate independently.
33
What are the mechanisms of plasmid replication?
Bidirectional replication and rolling-circle replication.
34
What is the difference between high-copy and low-copy number plasmids?
High-copy: Many copies per cell; low-copy: Few copies per cell with a partitioning system.
35
What information do plasmids carry?
Antibiotic resistance, virulence factors, metabolic enzymes, and conjugation genes.
36
How are plasmids transmitted?
Through conjugation, transformation, or transduction.
37
What are the similarities between archaeal genomes and other domains?
Similar to bacteria in chromosome structure and operons; similar to eukaryotes in transcription machinery.