Lecture 22: Gene therapy Flashcards

(34 cards)

1
Q

define gene therapy

A

the delivery of therapeutic genes into the human body to correct conditions created by a faulty gene or genes

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2
Q

gene therapy - Cystic Fibrosis

A
  • conventional treatment includes back clapping to drain lung mucus, drugs to thin mucus, antibiotic treatments
  • the CFTR gene was cloned in 1989 and by 1993 scientists had begun gene therapy trials. the challenge, however, was the right amount of CFTR.
    0 in early 1990s, medical researchers placed the normal allele of the gene into the respiratory tissue of mice with the disease. these mice produced a functional CFTR protein
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3
Q

gene therapy - sickle cell anaemia

A
  • most widespread inherited blood disorder in North America
  • homozygosity for the HbBs allele
  • current treatment consists of a prescription drug with toxic side effects or bone marrow transplantation
  • in 2001, a Harvard research team successfully treated a sickle-cell mouse model with gene therapy
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4
Q

two primary strategies for gene therapy

A

ex vivo gene therapy
in vivo gene therapy

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5
Q

ex vivo gene therapy

A

cells are removed from the patient -> gene introduced into the cells -> cells reintroduced into the body

eg bone marrow blood precursor cells

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6
Q

in vivo gene therapy

A

introducing genes directly into tissues and organs in the body (injected into retinal cells, inhaled into the lungs)

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7
Q

what is the main challenge with in vivo gene therapy?

A

delivering genes only to intended tissues

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8
Q

use the liver as an example to compare in vivo gene therapy with ex vivo gene therapy

A

patient with liver cell genetic defect, lacks gene for blood-clotting protein.

ex vivo:
- remove small portion of liver to isolate cells
- grow cells in culture
- introduce normal genes for clotting protein
- transplant liver cells back into patient. genetically altered proteins provide clotting protein

in vivo:
- normal gene for blood-clotting protein is placed into viruses
- these viruses act as vectors for gene delivery
- directly introduce normal gene for clotting protein into patient’s liver cells

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9
Q

SCID

A

SCID = severe combined immunodeficiency
- defect in gene called adenosine deaminase (ADA)
- produces an enzyme involved in the metabolism of nucleotide dATP
- accumulation of dATP is toxic to T cells
- without T cells, B cells cannot recognise antigen and make antibodies

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10
Q

ex vivo gene therapy - SCID

A

first human gene therapy (1990)
1. remove ADA-deficient T cells from the SCID patient
2. culture cells in the laboratory
3. infect the cells with a retrovirus that contains the normal ADA gene
4. rein fuse the ADA gene containing T cells back into the SCID patient; genetically altered T cells produce ADA

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11
Q

in vivo gene therapy - Leber’s congenital amaurosis

A
  • UPenn and Children’s hospital of Philadelphia
  • LCA is a degenerative disease of the retina that affects 1/50000-100,000 infants each year and causes severe blindness
  • young adult patients with defects in the RPE65 gene were given injections of the normal gene
  • complete vision was not restored but 4 children gained enough vision to play sports and several months after a single treatments patients can see more light/navigate an obstacle course
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12
Q

in what way do we rely on viruses as vectors for gene delivery?

A

we can use the viral genome to carry a therapeutic gene or genes -> infect human cells, introducing the gene

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13
Q

list the various types of viruses we can use for gene delivery

A
  • adenovirus (common cold): immunogenicity
  • Adeno associated virus (AAV): does not integrate into genome
  • retrovirus
  • HIV based (lentiviral vectors): integrates into the genome
  • herpes virus (cold sores, some cause STDs): target CNS
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14
Q

when we use viruses as vectors, what must we make sure to do?

A

we must make sure the virus has been genetically engineered so that it can neither produce disease nor spread throughout the body

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15
Q

mode of infection of viruses

A
  1. attachment: selective binding to cells
  2. injection: release genetic material into nucleus or cytoplasm
  3. human cell acts as a host to reproduce the viral genome and to produce viral RNA and proteins
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16
Q

why viruses make good vectors

A
  • they are efficient at infecting many types of human cells
  • retroviruses or lentiviruses (HIV) permanently inserted their DNA into host cell genome (integration)
  • some viruses infect only certain types of cells - good for targeted gene therapy
17
Q

gene therapy with a retroviral vector

A
  1. attachment
  2. injection
  3. RNA -> dsDNA -> insert viral DNA into host genome
18
Q

gene therapy with an AAV vector

A
  1. attachment
  2. injection
  3. ssDNA -> dsDNA -> viral DNA not incorporated into host, usually extrachromosomal
19
Q

how to package a gene into retroviral particles

A
  1. make the recombinant retroviral RNA genome:
    - LTRs (Long Terminal Repeats): required for integration and transcription
    - Ψ (psi) packaging signal: ensures RNA is packaged into the viral capsid
    - gene (downstream of promoter)
  2. package recombinant genome into viral particle:
    check video
20
Q

SCID-X1

A

X-linked severe combined immune deficiency

  • LOF mutation in IL2-RG (necessary to promote the growth of several immune system cells)
  • in 2000, several SCID-X1 patients were cured substantially by gene therapy
  • out of the 9 children treated, 8 are still alive
  • however, 4 eventually developed leukaemia due to insertional mutagenesis, 1 succumbed to the cancer
21
Q

potential risks of viruses as vectors

A
  • death of 18 year old Jesse Gelsinger in 1999 due to complications related to adenovirus vector
  • death of two children in France in 2002
  • temporary cessation of a large number of gene therapy trials and FDA stopped most retroviral studies
  • trials eventually resumed with greater patient monitoring
22
Q

alternative gene delivery options (non-viral)

A

liposomes -> lipid nanoparticles with an active pharmaceutical/genetic ingredient

23
Q

how can we tackle dominant negative or toxic alleles?

A

using RNA interference (RNAi) technology

24
Q

how does RNAi work?

A

uses complementary RNA to silence gene expression

25
how has RNAi proven to be a promising way to turn off disease genes?
used successfully in cell culture but took over a decade to live up to its promise as a treatment for disease
26
example of endongenous RNAi and how we can use it
using gene therapy to stimulate naturally occurring microRNAs (miRNAs)
27
challenges facing gene therapy
- Can therapeutic gene expression be controlled? - Can we safely and efficiently target only cells that require the gene? - How can gene therapy be targeted to specific regions of the genome? - How long will therapy last? - Will immune system reject? - How many cells need to express the therapeutic gene to treat the condition effectively?
28
genome editing: TALENS
transcription activator-like effector nuclease. these are engineered proteins used for precise genome editing which combine: A DNA-binding domain from TALEs (proteins derived from plant pathogens like Xanthomonas) A DNA-cutting domain from the FokI endonuclease
29
CRISPR-cas9 programmable DNA cleavage
Cas9 uses a guide RNA to locate and bind a specific DNA sequence next to a PAM site. It then creates a double-strand break, allowing targeted gene disruption or editing. Has been used successfully in a wide range of organisms
30
type II CRISPR/cas9 system ingredients
nuclease: - Cas9 single-guide RNA: - CRISPR RNA (crRNA) - trans-activating crRNA (tracrRNA) - optional: section of DNA repair template that is utilised in either non-homologous end joining (NHEJ) or homology directed repair (HDR)
31
what two factors does CRISPR/cas9 depend on for specificity?
the target sequence (20bp long) and the PAM
32
main advantage of CRISPR-cas9
specificity - allows us to target and modify particular DNA sequences in the vast expanse of a genome
33
use of CRISPR- cas9 for sickle cell anaemia
Goal: Use CRISPR-Cas9 to cut the mutated HBB gene and provide a corrected DNA template for homology-directed repair (HDR). - Extract patient hematopoietic stem cells (HSCs) from bone marrow or blood. - Use CRISPR-Cas9 + a DNA template to correct the point mutation in HBB ex vivo. - Re-infuse the edited HSCs into the patient → they produce healthy red blood cells.
34
distinguish between a knocking and knockout
A knockout deletes or disrupts a gene using error-prone NHEJ to inactivate it. A knockin inserts or replaces a gene sequence using precise HDR, often to fix or modify a gene.