Molecular Genetics Flashcards

1
Q

Each strand of DNA separately serves as a template for a new complementary strand

A

semiconservative

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2
Q

The area that is being separated from the parent DNA as it is unwound

A

replication fork

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3
Q

The new DNA strand that can be continuously synthesized in the 5’ to 3’ direction

A

leading strand

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4
Q

the strand that is made in okazaki fragments in the 5’ to 3’ direction

A

lagging strand

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5
Q

a __ ____, a short segment of nucleotides, is laid down by the enzyme ____. Once this is place __ __ can latch onto it and synthesize a new strand of DNA

A

RNA primer, primase, DNA polymerase

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6
Q

__ ___ unwinds the the DNA strand, forming a ____ shaped replication fork. __ ___ ___ proteins keep the DNA uncoiled until the replication process is complete. ______ will break and rejoin the double helix ahead of the replication fork in order to prevent __ and coiling

A

DNA helicase, Y, single stranded binding, topoisomerase, knotting

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7
Q

DNA _____ occurs when DNA ___ __ is used for replication. It moves in a __ to ___ direction

A

elongation, polyermase III, 5’ 3’

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8
Q

Since DNA must be synthesized in the __ to __ direction, the lagging strand is synthesized in segments as the polymerase must wait for the DNA to further ___. These fragments are called ____ fragments. For each individual okazaki fragment an ____ ___ is needed for each.

A

5’, 3’, unwind, okazaki, RNA primer

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9
Q

In DNA termination, __ __ removes the RNA primer strips and replaces them with DNA. Then __ ___ seals the ___ ____ between the okazaki fragments. ___ ___ and ____ proofread the strands to remove and replace wrong segments

A

polymerase I, DNA ligase, phosphodiester bonds, polymerase I, III

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10
Q

process by which DNA results in the synthesis of RNA and protein, leading to expressible changes

A

gene expression

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11
Q

Transcription takes place in the __ in eukaryotes, and in the ___ in prokaryotes

A

nucleus, cytoplasm

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12
Q

the enzyme that latches on to DNA and makes the complementary RNA strand

A

RNA polymerase

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13
Q

The ___ or the _____ strand is what acts as a guide for the synthesis of a new RNA strand, while the ___ or ____ strand does nothing

A

template, anti-sense, coding, sense

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14
Q

Before RNA polymerase starts synthesizing an RNA strand, it bind to the _____ segment of the DNA, which is ____ of the site of RNA synthesis. The parts of the promoter that the RNA polymerase actually bind to are called the ___ element or the TATA box, and the ___ element.

A

promoter, upstream, -10, -35

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15
Q

In transcription ___, RNA polymerase binds to specific promoter regions indicated by ____ ____, which determine the genes that should be expressed. Once RNA polymerase binds to the DNA it ___ it

A

initiation, transcription factors, unwinds

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16
Q

During transcription elongation, RNA continues unwind DNA and use the ___ strand as a template to synthesize RNA in the __ to ___ direction

A

antisense, 5’ 3’

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17
Q

Transcription termination occurs when RNA polymerase encounters the __ ___ which is usually a long sequence of ___ nucleotides, and ____ ___

A

stop point, adenine, falls off

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18
Q

mRNA ____ is a process by which pre-mRNA is modified before translation into a protein product. It occurs only in _____.

A

processing, eukaryotes

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19
Q

The 5’ cap is a ____ sequence that is added to the __ end of the mRNA. It provides __ for the mRNA and a point of attachment for ____

A

5;-G-P-P-P, 5’, ribosomes

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20
Q

The poly-A tail is the addition of ___ nucleotides to the end of an mRNA transcript which provides _____ and prevents it from ____

A

adenine, stability, degradation

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21
Q

RNA sequences that are translated into a final protein product

A

exons

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22
Q

RNA sequences that are removed before the RNA is translated

A

introns

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23
Q

___ and proteins form a ___ complex which helps to remove introns, and __ together exons.

A

snRNA, spliceosome, splice

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24
Q

process of removing introns and joining together exons

A

RNA splicing

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25
Q

__ ___ is a term used when the remaining exons can be combined in different ways to create different __ from the same __ ___. It allows a gene to code for multiple ____

A

alternative splicing, mRNA, RNA transcript, multiple proteins

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26
Q

sit on or near the promoter sequence and help the transcription factors and RNA polymerase to assemble

A

activator

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27
Q

Prevents transcription factors from assembling and blocks transcription

A

repressor

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28
Q

The most effective way to prevent gene expression is to __ the promoter region.

A

delete

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29
Q

siRNA or ____ RNA, is loaded with a sequences that matches an existing mRNA sequence the body wants to ___. It will bind to it, and ___ it into small ineffective pieces that cannot be translated

A

small-interfering, silence, chop

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30
Q

miRNA or ____ RNA, also has a matching sequence to the mRNA needing to be silenced, but acts as a physical ___ that prevents translation

A

micro, block

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31
Q

the process of creating proteins by using the genetic information from mRNA

A

translation

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32
Q

The genetic code is __ or ___, but it does not contain any ____. This allows possible mistakes in the ____ process to possibly be coded for by the same amino acid

A

redundant, degenerate, ambiguity, transcription

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33
Q

The stop codons that do not code for an amino acid

A

UAA, UAG, AGA

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34
Q

The start codon is always ___ and results in a ____ amino acid

A

AUG, methionine

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35
Q

The 3 letter codon that is read at a time

A

reading frame

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36
Q

A clover shaped molecule responsible for transporting nucleotide triplets called anticodons and their associated amino acid; each is designated to carry a specific amino acid

A

tRNA

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37
Q

Ribosomes function in the binding of a ___ __ with its associated mRNA codon. It has ___ binding sites for tRNA and an additional site for the ____ molecule being translated

A

tRNA anticodon, 3, mRNA

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38
Q

Ribosomes that are free floating directly in the cytosol

A

free ribosome

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39
Q

ribosomes that are bound to the cytosolic side of the rough ER surface

A

bound ribosomes

40
Q

___ ribosomes are bigger than ___ ribosomes. However, in both, translation takes place in the ___, across ___

A

eukaryote, prokaryote, cytosol, ribosomes

41
Q

The attachment of an amino acid to its corresponding tRNA molecule

A

tRNA charging

42
Q

The ribosome contains the mRNA binding site, the ___ site, where the tRNA will detach after it has contributed to translation, the ___ site, that carries the tRNA molecule that is bound to the elongating peptide chain, and the ___ site, the site where the second tRNA binds to delivery the next amino acid in the sequence

A

exit, peptidyl, aminoacyl

43
Q

In translation initiation the ____ subunit of the ribosome attaches to the mRNA. Then the tRNA ___ that is complementary to the __ sequence will attach.Then the ___ subunit of the ribosome assembles. This occurs at the ___ site of the ribosome

A

small, anticodon, start, large, P

44
Q

During translation elongation, the tRNA bringing the next amino acid binds to the __ site, and a ___ bond is formed between the amino acid chain in the ___ site and the new amino acid in the A site is formed. The ribosome then moves in the __ to __ direction, causes the tRNAs to shift down, and the one in the __ site leaves, while the one in the P site stays, and the __ site is open again

A

A, peptide, P, 5’ 3’, E, A

45
Q

Translation occurs when a __ __ enters the A site, and proteins called ___ ___ attach to the stop codon in the A site. The tRNA and __ ___ detach. The release factors than unbind from the mRNA and the __ ___ disassemble

A

stop codon, release factors, polypeptide chain, ribosomal subunits

46
Q

Extra segments at the ends of chromosomes that prevent the genome from being shortened during cell replication

A

telomeres

47
Q

Chromosomes become shorter with each DNA replication because the ___ ___ removed at the ends of the DNA cannot be filled in by __ ___

A

RNA primer, DNA polymerase

48
Q

Telomeres are ___ that attach to the end of the DNA template and adds a short ___ sequence of DNA

A

enzymes, repeating

49
Q

First telomeres carry the ___ template and bind to the ___ DNA ___ at the end of the strand. Then, the RNA template is used to synthesize the new strand, and telomerase ____ to continue the process. Then, a ___ can be added and polymerase can fill in the rest of the strand

A

RNA, 3’. overhang, shifts, primer

50
Q

The limit on cell replication imposed by the shortening of telomeres with each division

A

hayflick limit

51
Q

the hayflick limit is a concept used to explain __ __ and states that the number of possible cell divisions is dependent on the __ of the telomeres. ___ cells will hit their hayflick limit sooner than ___ cells

A

cellular aging, length, older, younger

52
Q

Mutations that occur in a single nucleotide base

A

point mutation

53
Q

A point mutation in which a single base is exchanged with another

A

substitution

54
Q

A point mutation in which a base is added

A

insertion

55
Q

A point mutation where a base is deleted

A

deletion

56
Q

when no changes occur to the desired amino acid because of the degeneracy of the genetic code

A

silent mutations

57
Q

When a substitution causes a change in an amino acid that was originally coded

A

missense mutation

58
Q

When a substitution mutation causes a codon that codes for an amino acid to change into a stop codon

A

nonsense mutation

59
Q

Point mutation that leads to the alteration of the reading frame

A

frameshift mutation

60
Q

DNA is ___ charged and ___ bonded to the ___ charged histones

A

negatively, ionically, positively

61
Q

The DNA histone complex

A

nucleosome

62
Q

chromatin that is loosely packed; allows for RNA polymerase to transcribe

A

euchromatin

63
Q

Chromatin that is tightly packed; prevents RNA polymerase from transcribing

A

heterochromatin

64
Q

The complete set of DNA

A

genome

65
Q

the study of genomes

A

genomics

66
Q

the entire set of expressed mRNA

A

transcriptome

67
Q

the entire set of expressed proteins

A

proteome

68
Q

application of computer science to analyze biological data

A

bioinformatics

69
Q

a global attempt to sequence the human genome

A

human genome project

70
Q

splitting the DNA and using fluorescent nucleotides to synthesize new strands that allow to determine the order of the genetic sequence

A

sanger sequencing

71
Q

Cloning and splicing DNA into fragments and using software to order them

A

whole genome shotgun sequencing

72
Q

sequencing the DNA of entire communities of species

A

metagenomics

73
Q

metagenomics is helpful in the sequencing of a ___ or a ___ ___, and allows us to determine ___ __, __ __ and __ ___

A

microorganism, microbial population, genome size, gene number, gene density

74
Q

The total number of nucleotides an organism has

A

genome size

75
Q

____ genome size are usually bigger than ___, but bigger does not mean a more ___ organism

A

eukaryotes, prokaryotes, complex

76
Q

the amount of genes or nucleotides that code for a ___ is called the __ __. __ have more gene sequences than the ____. This not related to ___ ___

A

protein, gene number, eukaryotes, prokaryotes, gene size

77
Q

The ratio of the number of genes to the total number of nucleotides is called ____ ____. Prokaryotes are ___ than eukaryotes

A

gene density, denser

78
Q

serve as a binding site for regulatory proteins and control the expression of genes

A

regulatory genes

79
Q

gene sequences that don’t code for anything

A

non coding

80
Q

DNA sequences that are repeated throughout the genome e.g. telomeres

A

repetitive

81
Q

stretches of DNA that can move from one region of the genome to another; in both prokaryotes and eukaryotes

A

transposable elements

82
Q

transposons are seen in ___ genome sizes. They move their DNA by either ___ their DNA out of the existing location before being ___, or by ____ and then ___ their DNA into place

A

larger, cutting, relocated, copied, inserted

83
Q

Retro-transposons are seen in ____ genomes. They _____ _____ the DNA onto an ___ intermediate and then ___ it back to DNA to insert it into the target area

A

smaller, reverse, transcribe, RNA, transpose

84
Q

Transposition can interrupt the gene sequence it inserted itself into, and cause both a __ or __ effect

A

positive, negative

85
Q

multiple copies of identical genes that are grouped close to each other to produce rapid copies of a gene product

A

identical mutligene

86
Q

multiple copies of related families of genes

A

nonidentical multigene

87
Q

Closely related organisms can be compared using small __ ___. Distantly related species can be compared by observing __ ___ ___, or identical genes. Organisms in the same species can be compared by using __ and ____

A

genetic differences. highly conserved regions, SNPs, CNVs

88
Q

SNPs are __ _ ___, or a single _ __ difference in the genome. This contributes to __ ___

A

single nucleotide polymorphism, base pair, individual diversity

89
Q

CNVs are __ __ __, or regions where one or more ___ __ is present. This arises from _ ____ ___ or ___

A

copy number variants, gene copies, irregular genome duplications, deletions

90
Q

the study of the developmental changes in different organisms

A

evolutionary developmental biology

91
Q

ensure that the anatomical structures of the organism develop correctly and right order

A

homeotic gene

92
Q

DNA sequence found in homeotic genes that encodes for homeodomain proteins; highly conserved

A

homeobox

93
Q

Transcription factors that control the expression of many developmental genes

A

homeodomain proteins

94
Q

A specific homeotic gene that ensure body position and correct anatomical sequence

A

hox gene

95
Q

the majority of the human genome is made of ___ __ __

A

non coding genes