Week 1 - introduction Flashcards

1
Q

Learning definition

A

acquisition of an altered behavioural response due to an environmental stimulus

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What type of learning applies to most learning?

A

associative learning

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Memory definition

A

The processes through which learned information is stored. Memory can be short lasting or long lasting

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Retrieval definition

A

A conscious or unconscious process that accesses stored information

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What are three types of the experimental analysis of memory with examples?

A

Observations - e.g brain imaging

Loss of function - establishes whether a process is necessary for memory - e.g lesion studies

Gain of function - establishes whether a process is sufficient for memory - e.g Pharmacological activation of a molecule

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Describe Karl Lashleys 1950 lesion study

A

Method:
Trained rats on a navigation task
Lesioned every part of the cortex bit by bit, in different orders

Results:
Huge variability in memory ability following rats cortical lesion
There is not one single brain region where all memories are located

His equipotentiality hypothesis proposed that other brain areas can compensate when one is damaged.

Conclusion:
Memory is distributed throughout

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What is one criticism of Lashleys conclusion

A

He was considering general memory.

However we now know that specific memories are located in specific areas of the brain

He only lesioned the cortex, however modern day lesion studies show the the hippocampus, which is situated deeper in the brain is heavily implicated in memory

The task he used (maze learning) relied on multiple memory systems:
The maze task likely engaged procedural learning (motor skills and habits), which depends more on the striatum and cerebellum than on the hippocampus. So even if cortical areas were damaged, rats could still use other systems to solve the task.

His lesioning method was crude:
Using a soldering iron lacked the precision to isolate functional areas. This made it hard to target or interpret specific brain region involvement.

The engram is distributed, but not equally:
Lashley concluded that memory is widely distributed, which is partly true. However, we now know that different types of memory (e.g. episodic, emotional, procedural) are localized to different areas, and his tools weren’t sensitive enough to detect this specialisation.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Strengths and weaknesses of lesion studies

A

Strengths: Requirement of brain regions for memory can be determined. This will identify the location of stored memory

Show causal links between brain regions and memory.

Key historical findings (e.g. HM’s hippocampal lesion → loss of episodic memory).

In animals, allow controlled testing of memory functions.

Weaknesses: :

Lesion may affect performance in the behavioural task, preventing
assessment of memory. Lesion may also cause effects in other brain regions.

Early methods lacked precision, possibly affecting surrounding tissue.

Brain plasticity may mask memory deficits.

Lesions often disrupt multiple functions, not just memory.

Human lesion studies rely on natural damage, which is unpredictable.

Cannot show how memory regions interact in networks.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

What are strengths and weaknesses of imaging studies

A

Flashcard:

Q: What are the strengths and weaknesses of imaging studies for understanding memory?
A:
Strengths:

Show active brain regions during memory tasks (e.g. fMRI, PET).

Non-invasive and safe for repeated use in humans.

Allow study of healthy individuals as well as patients.

Reveal network-level activity and functional connectivity.

High spatial resolution (especially fMRI) helps pinpoint memory-related areas like the hippocampus or prefrontal cortex.

Weaknesses:

Provide correlational, not causal, data—can’t prove necessity of regions.

Low temporal resolution (especially fMRI), missing fast neural events.

Complex tasks can activate multiple overlapping areas.

Can be affected by movement artifacts or individual anatomical differences.

Expensive and requires specialised equipment.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Describe the Morris water maze

A

The Morris Water Maze is a behavioural task used in rodents to study spatial learning and memory. Animals must learn to find a hidden platform submerged in a pool of opaque water using spatial cues around the room.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What is Semons 1921 proposal

A

Memories are stored as engrams

Engrams are lasting physical changes in brain state and structure that occur in response to an experience

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

strengths of animal experiments to study memory

A

Allow precise control over genetics, environment, and experimental conditions.

Enable invasive techniques (e.g. lesions, optogenetics, electrophysiology) not possible in humans.

Support causal inference about brain–memory relationships.

Shorter lifespans allow study of development and ageing.

Can use well-validated tasks like the Morris Water Maze to study specific memory types.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

weaknesses of animal experiments to study memory

A

Species differences may limit how well findings generalise to humans.

Animals can’t report subjective experiences, limiting study of declarative memory.

Some memory types (e.g. autobiographical or semantic) are hard to model in animals.

Ethical concerns over invasive procedures and animal welfare.

Behaviour may be influenced by stress or motivation, not just memory.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

First evidence of LTP, that would support the concept that hebbian plasticity exists

A

Bliss and Lømo (1973) discovered Long-Term Potentiation (LTP) in the hippocampus of anaesthetised rabbits. By delivering high-frequency stimulation to the perforant path (input to the hippocampus), they observed a long-lasting increase in synaptic strength at the dentate gyrus. This was the first evidence that synaptic connections could be strengthened through activity, suggesting a neural mechanism for learning and memory.

This supports the idea that Hebbian Plasticity exists HOWEVER, it does not prove that memory is dependent on hebbian plasticity

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is the hebb postulate?

A

neurons that fire together wire together

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Describe the Autophosphorylation proposal of CaMK11q

A

Lisman (2017) proposed that kinase that can phosphorylate itself and could store memory. CaMK11 was discovered a year later that has Autophosphorylation properties and can possibly act as a memory storing molecule.

The CaMKII autophosphorylation hypothesis suggests that CaMKII (calcium/calmodulin-dependent protein kinase II) plays a key role in memory by sustaining synaptic strengthening after LTP induction. When activated by calcium influx during synaptic activity, CaMKII autophosphorylates, remaining active even after calcium levels fall—potentially maintaining LTP.

Evidence:

Genetic knockout mice lacking CaMKII autophosphorylation show impaired LTP and deficits in spatial memory (e.g. in the Morris Water Maze).

CaMKII accumulates at postsynaptic sites during LTP.

Blocking autophosphorylation disrupts synaptic plasticity without affecting baseline transmission.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

Why do we need to understand learning and memory?

A

Discovery – Understanding the brain is one of the final frontiers for
human discovery and the capacity for learning vast amounts of
information and remembering over long periods of time are defining
feature of our brains. Gaining a deeper understanding of these
processes will help us address known needs in society, but also lead
to progress in many unexpected directions.
* Health – The average age of our population is increasing, and
memory deteriorates with age. Moreover, age is the primary risk
factor for various forms of dementia, including Alzheimer’s Disease,
Vascular Dementia, Lewy Body Dementias and Fronto-temporal
Dementia. Other learning deficits occur much earlier in life.
* Technology – Much of technology is inspired and influenced by our
own capacity for learning and memory, particularly in relation to
computers. Our capacity to recognize faces from varied viewpoints,
for instance, cannot be surpassed by computers. Much work is
required to understand how our brain solves that and many other
problems relating to memory.
* Education – By understanding more about the biological basis of
how humans learn we may dramatically improve our ability to
educate, either through developing new methods or
technological/pharmaceutical aids.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

what is hebbian plasticity

A

Hebbian plasticity is the idea that synaptic connections are strengthened when both the presynaptic and postsynaptic neurons are active together—summarised by the phrase “cells that fire together, wire together.” It explains how experience can shape neural circuits and underlies learning and memory through mechanisms like Long-Term Potentiation (LTP).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

Describe details of hebbian plasticity

A

Neurons wire together when one is repeatedly and persistently exciting the other

Its not the whole neuron that becomes more excitable when it is wired together with another neuron - it is the specific single connection between that neuron and another neuron

This often involves the LTD of other inputs. So you are essentially biasing the recipients neuron to one input over another

20
Q

What is the cell assembly?

A

Donald Hebb proposed the cell assembly theory in 1949, suggesting that groups of neurons that are repeatedly activated together form a functional network or “assembly.” Once formed, activating part of the assembly can reactivate the whole, allowing for the storage and retrieval of memories. This idea laid the groundwork for understanding associative learning and the neural basis of thought and memory.

Cell assemblies are Groups of neurons that are connected through hebbian plasticity to mediate perceptual binding

Our memory system has the ability to complete a pattern based on limited information. Cell assemblies can explain this.

Assemblies (groups of neurons) are activated by a stimulus.
After the stimulus, activity reverberates across the neurons.
Hebbian plasticity selectively strengthens recipricol connections between particular active neurons.
The strengthened connection among the neurons contain the engram.
Partial stimulus activates part of the assembly/the engram, which in turn activates the whole assembly (pattern completion)

21
Q

What is the phase sequence?

A

A phase sequence is a series of cell assemblies that activate in a specific order, proposed by Donald Hebb to explain how complex thoughts and behaviours unfold over time. When one cell assembly is activated, it can trigger the next in the sequence, forming a chain of neural activity that represents structured mental processes, such as thinking, planning, or recalling events.

22
Q

Outline Clayton, Bussey and Dickinson’s scrub Jay studies

A

Scrub jays have sophisticated episodic memory

They hide their worms and nuts and remember exactly where they buried them

They always recover the worms before the nuts because nuts are preserved for longer

If another bird is watching them bury the food, they will come back later when they are no longer watching, and move all their food

23
Q

Outline Kandel’s study on habituation in aplasia sea slugs

A

aplasia have giant neurons that are easy to clamp and get intraneuron recordings

He discovered habituation

If you squirt water onto the slugs gill it will initially withdraw the gill. If you keep doing it it will stop the gill from withdrawing.

Kandel found that as this happens, the sensory neuron is as electrically active as before, however the motor neuron is no longer active. This suggests that the synapse has weakened.

///

.

24
Q

Why is most memory work on mice?

A

It is mammal - more related to humans

It produces large litters

Short gestation time

Matures quickly

Amenable to genetic engineering: molecular mechanisms can be suppressed or enhanced; cell type markers and activity-dependent markers can be expressed; opto-genetic and chemo-genetic actuators can be expressed; diseases with known genetic causes can be modelled

25
What is Korsakoff syndrome
Patients that were losing episodic memory Found to be caused by drinking bad alcohol with methanol that caused a lesion in a small part of the brain called the mammillary bodies This shows that there are some memory centres specific to very specific types of memory
26
What are two subtypes of declarative/explicit memory
semantic episodic
27
What are two subtypes of non declarative memory
Associative Non-associative
28
What are theories behind non-declarative or implicit memories
Pavlovian (classical) conditioning is when an animal learns to associate a neutral stimulus (e.g. a bell) with a meaningful one (e.g. food), leading to a learned response (e.g. salivation). Operant conditioning involves learning through rewards and punishments: behaviours are strengthened or weakened based on their consequences (e.g. pressing a lever for food). Both involve non-declarative (implicit) memory, as they shape behaviour without conscious recall, and rely on the cerebellum and amygdala
29
Describe intra and extracellular recordings
Intracellular recordings measure the electrical activity inside a single neuron, allowing detection of resting membrane potential, action potentials, and synaptic potentials. They offer high-resolution data but are invasive and usually limited to one cell at a time. Extracellular recordings measure electrical signals from outside neurons, capturing the activity of one or more nearby neurons. They are less invasive and useful for studying spiking activity and population dynamics, but provide less detail about individual cell processes.
30
Describe spatial and temporal summation of EPSP
Spatial summation occurs when multiple excitatory postsynaptic potentials (EPSPs) from different synapses on a neuron are activated at the same time, and their combined effect brings the neuron closer to firing an action potential. Temporal summation happens when a single synapse is activated repeatedly in quick succession, allowing EPSPs to add up over time. Both processes increase the likelihood of reaching the threshold for an action potential and are key to neural integration.
31
How does hippocampal lamination help differentiate synaptic potentials from action potentials?
The organization of the hippocampus is unusual in that there is a single layer of excitatory cells with apical and basal dendrites projecting out in opposing directions. Thus, one can place an extracellular recording electrode into the dendrites on either side of the cell bodies and know that current will flow away from the electrode and into the dendrites when synaptic potentials occur. Likewise, when the electrode is positioned next to cell bodies current will flow away from the electrode into the cell body when an axon potential is generated. Interestingly, when synaptic potentials occur while you are recording next to the cell bodies then current flows out of the cell and towards the electrode, while action potentials generated while recording at the synapse will cause positively charged ions to flow away from the neuron and towards the electrode. This means that extracellular field potentials can be interpreted into synaptic and action potential components, even when recording from lots of cells and lots of synapses at once. Another key advantage is that all fibre pathways can be identified easily and stimulated in a relatively isolated way compared to in other regions of the brain.The hippocampus has a unique layered structure, with a single layer of excitatory neurons whose apical and basal dendrites project in opposite directions. This consistent architecture allows researchers to predict the direction of current flow during synaptic and action potentials. For example, placing an electrode in the dendritic layers detects inward current during synaptic input, while placing it near cell bodies detects current flow during action potentials. Because of this organisation, extracellular recordings can separate synaptic from action potentials, even when many cells are active. Additionally, fibre pathways in the hippocampus are well-organised and easy to isolate, making it ideal for precise stimulation and analysis compared to other brain regions.
32
Q: How did Bliss and Lømo (1973) discover Long-Term Potentiation (LTP) in the rabbit hippocampus?
Bliss and Lømo (1973) studied anaesthetised rabbits and delivered high-frequency stimulation to the perforant path, a major input to the dentate gyrus in the hippocampus. They recorded from granule cells and found a long-lasting increase in synaptic response (Measured by field EPSP) a, even after stimulation ended. This effect, called Long-Term Potentiation (LTP), was the first physiological evidence that synaptic strength can be persistently enhanced, supporting the idea that LTP is a neural mechanism for learning and memory.
33
What did Collingridge et al. (1983) discover about EPSPs and NMDA receptors?
Collingridge et al. (1983) showed that NMDA receptors are critical for Long-Term Potentiation (LTP). In hippocampal slices, they stimulated synapses to produce excitatory postsynaptic potentials (EPSPs) and found that applying an NMDA receptor antagonist (AP5) blocked the induction of LTP but not normal EPSPs. This showed that NMDA receptors are not required for baseline synaptic transmission, but are essential for synaptic strengthening, supporting their role as a molecular gate for learning-dependent plasticity.
34
Describe john O Keefes place cells experiment
John O’Keefe (1971) implanted electrodes into the hippocampus of freely moving rats to record single-unit activity from individual neurons. Using a tetrode recording technique, he tracked neural firing patterns while rats explored an open field. He found that specific neurons—later called place cells—fired only when the rat was in a particular location, forming a neural representation of space. By correlating neural firing with the animal’s position (tracked via overhead cameras), he showed the hippocampus encodes a cognitive map of the environment. This was foundational for understanding spatial memory and navigation.
35
What did Quiroga et al. (2006) discover in the "Halle Berry cell" experiment, and how? A:
Quiroga et al. (2006) recorded activity from individual neurons in the medial temporal lobe of human epilepsy patients using intracranial electrodes implanted for clinical monitoring. They found that some neurons responded selectively and invariantly to specific individuals—e.g., one neuron fired when the patient saw images of Halle Berry, her name written, or even a cartoon of her. These "concept cells" showed abstract, high-level representations, suggesting that specific neurons encode complex, semantic memory content rather than just visual features. This provided striking evidence for sparse and concept-based coding in the human brain.
36
How did Moser et al.'s study support the idea that learning depends on LTP?
Moser, Morris, and colleagues used repeated high-frequency stimulation across multiple sites in CA1 to saturate LTP, artificially inducing maximal synaptic potentiation (~30% gain). Rats were then trained in the Morris water maze, a test of hippocampus-dependent spatial learning. In the probe test (with the platform removed), control rats showed strong memory, spending more time in the correct quadrant. However, rats with saturated LTP showed no preference for the platform location, indicating they failed to form a spatial memory. A group with partial LTP induction showed some memory, but less than controls. Conclusion: This study demonstrated that when LTP is saturated, new learning is impaired, supporting the idea that LTP is not just correlated with learning, but is a necessary mechanism for encoding new memories.
37
Electrophysiology Vs. Imaging
patial resolution: Electrophysiology is low but targeted; imaging varies but can be very high. Number of cells sampled: Electrophysiology samples few cells (<20); imaging captures hundreds to thousands. Direct measurement: Electrophysiology measures signals directly; imaging provides a proxy (e.g. blood flow or calcium). Invasiveness: Electrophysiology is invasive but often minimally so; imaging varies from non-invasive (fMRI) to invasive (calcium imaging). Temporal resolution: Electrophysiology has excellent temporal resolution; imaging is generally poor in this regard. Cost: Electrophysiology is relatively affordable; imaging techniques are relatively expensive.
38
Describe the taxi driver sstudy
Woollett and Maguire (2011) studied London taxi drivers training for “The Knowledge” – a demanding memorisation of city streets. Using MRI scans, they found that those who qualified showed increased grey matter volume in the posterior hippocampus, compared to those who didn’t and to controls. This provided strong evidence that intensive spatial learning can physically change the brain, supporting the role of the hippocampus in spatial memory and neuroplasticity.
39
How do immediate early genes and CATFISH work
IEGs like Arc are genes that are rapidly and transiently activated in neurons within minutes of strong synaptic activity, such as during learning or memory encoding. When a neuron is strongly activated (e.g. during exploration of a new environment), calcium enters the cell, triggering signalling pathways that lead to transcription of IEGs—even without needing new proteins to be made first. Because IEGs are only expressed in recently active neurons, researchers use them as molecular markers to identify which neurons were involved in a particular experience, helping map memory traces (engrams). In tools like catFISH, researchers can even tell when a neuron was active by looking at where the Arc mRNA is located in the cell (nucleus = recent, cytoplasm = earlier).
40
Describe immediate early genes and memory
Guzowski and colleagues used the immediate early gene Arc to investigate how specific neurons are involved in memory encoding. In their experiments with rats exploring different environments, they found that Arc was expressed in distinct sets of hippocampal neurons depending on the environment, suggesting these neurons were part of environment-specific memory traces. Using a technique called catFISH (cellular compartment analysis of temporal activity by fluorescence in situ hybridisation), they showed that Arc could identify neurons activated at different times, helping distinguish sequential memory encoding events. Their findings supported the idea that IEG expression marks neurons involved in forming and storing specific memories, offering molecular-level evidence for memory engrams.
41
Describe gCAMP
Looger and colleagues developed and refined GCaMP, a genetically encoded calcium indicator that fluoresces in response to intracellular calcium increases, which occur when neurons fire. The study demonstrated that GCaMP can reliably report neuronal activity in living animals, allowing researchers to visualise and track the activity of specific neurons over time. Their work showed that GCaMP is: Sensitive to calcium transients linked to action potentials Genetically targetable, enabling cell-type-specific expression Usable for in vivo imaging, such as tracking neural activity during behaviour This marked a major advance in neuroscience by enabling non-invasive, high-resolution monitoring of dynamic neural processes and has since been widely used to study memory, perception, and decision-making.
42
Functional imaging of place cells head mounts
Rob Komorowski and colleagues used miniaturised head-mounted microscopes (miniscopes) with calcium imaging (using GCaMP) to study hippocampal place cells in freely moving mice. They recorded activity from large populations of neurons as mice explored different environments. The study showed that: Place cells form stable, location-specific firing patterns that persist over time. Some neurons also integrate spatial and contextual information, suggesting a role in episodic-like memory. This method allowed the team to link neural population dynamics with real-world behaviour, offering insight into how the hippocampus encodes rich spatial and contextual representations. This work provided powerful evidence for flexible, experience-dependent coding in the hippocampus and demonstrated the utility of functional imaging in naturalistic, behaviourally relevant settings.
43
pros and cons of freely moving imaging
Pros: Allows study of natural behaviour (e.g. exploration, decision-making) in realistic settings. Enables long-term tracking of the same neurons over days or weeks. Records from large populations of neurons simultaneously. Can reveal how neural activity relates to real-world actions and environments. Cons: – Lower temporal resolution than electrophysiology (misses precise spike timing). – Calcium signals are a proxy for electrical activity (not direct measurement). – Requires surgical implantation and genetic manipulation. – Imaging setups can still cause some constraint or stress to the animal. – Data processing is computationally intensive.
44
What did Penfield’s study show about brain stimulation and memory retrieval?
Neurosurgeon Wilder Penfield electrically stimulated the temporal lobes of awake patients undergoing surgery for epilepsy. In some cases, patients reported vivid, detailed memories, such as hearing a song or seeing a past event, even though the stimulation was random. This led Penfield to propose that the temporal lobe, especially the hippocampus, plays a key role in memory storage and retrieval. His findings were among the first to show that direct brain stimulation can trigger spontaneous memory recall, suggesting that memories are physically stored in specific brain regions.
45
How does optogenetics work
Optogenetics works by inserting genes for light-sensitive proteins (like channelrhodopsin or halorhodopsin) into specific neurons using viral vectors. These proteins are ion channels that open or close in response to specific wavelengths of light. Once expressed: Blue light can activate neurons via channelrhodopsin (lets positive ions in/excites). Yellow/orange light can inhibit neurons via halorhodopsin (pumps in negative ions/inhibits). Light is delivered through implanted optical fibres, allowing researchers to precisely control the timing and location of neural activation in awake, behaving animals. This technique allows for millisecond-level control of neural circuits, enabling causal testing of how specific brain cells contribute to behaviour, perception, and memory.
46
Describe how optogenetics can reactivate engrams
Liu, Ramirez, Tonegawa et al. (2012) used optogenetics to show that specific memory engrams can be artificially reactivated in the hippocampus. They genetically tagged dentate gyrus neurons activated during a fear conditioning event with channelrhodopsin (a light-sensitive protein). Later, when they shined blue light on those tagged neurons in a neutral context, mice exhibited freezing behaviour, as if recalling the fear memory—despite the environment being safe. This study provided causal evidence that: Specific neuronal ensembles store individual memories (engrams). Artificial reactivation of these ensembles can trigger behavioural recall. It was a landmark experiment showing that memories are encoded in defined, manipulable circuits.