Enzymes Flashcards

1
Q

Define transition state

A

Highest energy intermediate

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2
Q

What are transition state analogues

A

Inhibitors of enzymes

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3
Q

What does the enzyme do in terms of the transition state

A

Lowers the required energy to reach the transition state and positions reactants closer together - this favourable orientation lowers the Ea

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4
Q

3 functions of enzymes

A

Increase rate of reaction
Decrease activation energy
Facilitate energy conservation and transduction

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5
Q

What does the enzyme undergo in the induced fit model

A

Conformational change

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6
Q

Define Vmax

A

Point at which enzymes are saturated and rate cannot be increased

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7
Q

Define V0

A

Initial rate of reaction

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8
Q

What is the Michaelia-Menton model (2) and what is 1 assumption

A
  • For an enzyme catalysed reaction to proceed an ES complex needs to be formed
  • Interactions between E and S are reversible processes
    1. There is a constant concentration of ES complexes
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9
Q

Define the 3 rate constants

A

K1 - Formation of the ES complex
K-1- Reverse process of ES to form E and S
K2 - All other steps in catalytic cycle

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10
Q

Define Km

A

Michaelia-Menton constant - relative affinity of a substrate for an enzyme

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11
Q

On a graph, what corresponds to the Km

A

1/2 Vmax

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12
Q

In the Lineweaver-Burk plot what does the Y-intercept represent

A

1/Vmax

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13
Q

Define turnover number - what is it also called

A

Maximum number of product molecules produced per unit time per active site - Kcat

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14
Q

What is equal to Kcat/Km

A

Specificity constant

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15
Q

What is a catalytic strategy

A

A mechanism adopted by enzymes to facilitate transition state formation

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16
Q

Give 3 advantages of conformational change

A
  • Greater contact area for more interactions
  • Facilitating substrate specificity
  • Allows exclusion of ‘undesirable’ components
17
Q

Outline approximation

A

1 or more substrates brought into the active site in the correct orientation
Substrates are coordinated through non-covalent interactions

18
Q

What does acid-base catalysis lower and what is the interaction between

A

Lower energy transition state
Acidic and basic side chains of AA with the substrate

19
Q

What specific metals are used in metal ion catalysis and what does it facilitate the form of

A

Transition metals
The transition state

20
Q

In covalent catalysis where is the covalent bond formed

A

Between the substrate and the AA side chain