Block B 3 Flashcards

environmental microbiology (33 cards)

1
Q

what is isolation in pure culture important for

A

detailed studies in controlled (lab) environment
biotechnology applications

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2
Q

what are biofilms

A

assemblages of bacterial cells adhered to a surface and enclosed in an adhesive matrix excreted by the cells

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3
Q

what is the matrix typically composed of in biofilms

A

polysaccharides

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4
Q

what is the microbial hormone that controls biofilm formation

A

c-di-GMP

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5
Q

why do bacteria form biofilms

A

-self defense
-allows cells to remain in favourable niche
-allows bacterial cells to live in close associated with one another

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6
Q

what are the 2 ways of microbial isolation from the environment

A

direct isolation
enrichment culture

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7
Q

what is direct isolation used for

A

enumeration
detailed studies in controlled environments

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8
Q

what is enrichment culture used for

A

isolation (biotechnology)
risk assessment

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9
Q

what are the established medium and incubation conditions for

A

selective for desired organism
de selective for undesired organisms

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10
Q

3 ways that pure cultures can be obtained

A

streak plate
agar plate
liquid dilution

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11
Q

how can anaerobic bacteria grow method

A

agar shake up method
dilutions of mixed cultures in tubes of molten agar

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12
Q

how can aerobic bacteria grow method

A

plates

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13
Q

problems with direct counting

A

cannot distinguish between live and dead cells without special stains
small cells overlooked
phase contrast microscope req if stain not used

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14
Q

2 main ways to perform plate counts

A

spread plate method
pour plate method

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15
Q

to obtain the appropriate colony number the sample counted should always be …

A

diluted

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16
Q

what does MPN stand for

A

most probable numbers

17
Q

how to obtain MPN

A

-serial dilution of inoculum in liquid until final tube shows no growth
-repeat until pure culture obtained
-estimation of microbial numbers for routine sampling

18
Q

how to check for purity when finding MPN

A

-microscopy
-colony characteristics on plate
-test for growth in other media
-check for contamination

19
Q

what must organisms balance

A

growth and death rates

20
Q

what 2 methods are there for organisms to balance growth and death rates

A

oligotrophs
copiotrophs

21
Q

what other names are there for oligotrophs

A

k strategists
autochthonous microbes

22
Q

what other names are there for copiotrophs

A

r strategists
zymogenous microbes

23
Q

what can be said about nutrient uptake with oligotrophs

A

nutrient uptake enzymes with low specificity but high affinity

24
Q

what can be said about nutrient uptake with copiotrophs

A

nutrient uptake enzymes with high specificity but low affinity

25
what undergoes cell rounding and reduction in growth
arthrobacter (oligotroph)
26
what spores are metabolically active
streptomyces (copiotroph)
27
what does VBNC stand for
viable but nonculturable
28
metabolic activity of VBNC bacteria
very low
29
what is reduced in VBNC bacteria
nutrient transport respiration synthesis of macromolecules
30
what does VBNC have the ability to
become culturable once resuscitated
31
sources of novel targets
synthetic non synthetic natural products (fungi, plants, bacteria)
32
3 steps to see zone of inhibition
lawn of indicator organism agar plug of producing organism filter paper disk soaked in test compound
33
what does MIC stand for
minimum inhibitory concentration