Chapter 21 Flashcards

(41 cards)

1
Q

Gene expression

A

going from info in the nucleus on a DNA molecule to getting an actual functioning protein

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2
Q

Nucleotide language to nucleotide language

A

transcription

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3
Q

nucleotide language to amino acid language

A

translation

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4
Q

bases in RNA

A

G=C; A=U

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5
Q

types of RNA

A

mRNA, rRNA, tRNA

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6
Q

two parts of DNA used for making messenger RNA

A

coding strand and template strand

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7
Q

coding strand

A

identical to the RNA except it has T instead of U; it is the non-template strand of the DNA

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8
Q

template strand

A

serves as a template for RNA synthesis

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9
Q

Basic steps of transcription

A
  1. DNA helix is open
  2. RNA pol binds to DNA
  3. Reads signal strand 3’ to 5’
  4. Synthesize mRNA 5’ to 3’
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10
Q

promoter region

A

where RNA pol binds to DNA; tells RNA pol where it needs to start making RNA

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11
Q

operon model for prok

A

a group of genes with related functions under control of one promoter

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12
Q

what are the 2 sequences upstream from startpoint for prok promoter

A

6-nucleotide -10 sequence (TAATAT box or prinbow box);

6-nucleotide -35 sequence

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13
Q

what does a highly conserved region mean

A

very often it is the same sequence even in different species

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14
Q

RNA proofreading

A

exonuclease activity of the RNA pol

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15
Q

about how many base pairs does RNA pol bind to

A

30

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16
Q

termination signal

A

RNA sequence that when transcribed, stops elongation

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17
Q

2 termination methods

A

Rho factor or intrinsic termination

18
Q

intrinsic termination

A

GC rich region followed by U rich resides near the 3’ end. hairpin loop tends to pull RNA away from DNA

19
Q

rho factor one

A

participation of another protein, rho factor. ATP dependent unwinding enzyme that unwinds the new RNA away from the DNA template

20
Q

polycistronic

A

one message; many proteins;

single mRNA coding for more than 1 protein

21
Q

3 characteristics of prok mRNA

A

polycistronic, no post-transcriptional modifications, immediately available for translation

22
Q

why is mRNA immediately available in proks

A

there is no nucleus, so oftentimes a ribosome will latch on and start translating before transcription is even complete

23
Q

Differences in euk transcription (6)

A

3 diff polymerases, promoters are more varied, transcription factors, extensive RNA processing, protein-protein interaction, RNA cleavage

24
Q

transcription factors

A

required to bind RNA pol

25
extensive RNA processing really means
post-transcriptional modification
26
protein-protein interactions
bind to DNA and/RNA
27
RNA pol I
in nucleolus; synthesizes rRNA
28
RNA pol II
synthesizes precursor mRNA, snRNA, and microRNAs
29
RNA pol III
synthesizes small RNAs such as tRNA
30
RNA pol I promoter
core promoter- extends into sequence that is transcribed; | upstream control element- similar sequence to core promoter
31
RNA pol II promoter
core promoter composed of initiator (Inr), TATA box, TFIIB recognition element (BRE), downstream promoter element (DPE)
32
RNA pol III promoter
promoters are entirely downstream of transcription start site
33
upstream means
it is located before the start site. downstream is after
34
how are polymerases recruited
based on which promoters there are
35
how are transcription factors named
TF(roman numeral, letter) ex. TFIIA roman numeral for polymerase and letter for its order
36
starting transcription factor
TFIID, which binds to DNA, then other TFs bind to TFIID
37
One method of euk termination
euk RNA cleavage
38
euk RNA cleavage
RNA is cut away from DNA molecule 10-35 nucleotides downstream from a special AAUAAA sequence
39
4 kinds of euk RNA processing
3' poly(A) tails, 5' capping, intron removal, chemical modifications
40
splicesomes
remove introns
41
purpose of removing introns
alternative splicing increases variation