Unit 4 (CH 16) Flashcards

1
Q

DNA consists of two strands of nucleotide monomers repetitively linked together.
□ At the ______’ end of each strand is a free ________________ group.
□ At the ______’ end of each strand is a free ________________ group.

A

□ At the 5’ end of each strand is a free phosphate group.
□ At the 3’ end of each strand is a free hydroxyl group (-OH).

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2
Q

In the polymerization of DNA, a phosphodiester bond is formed between a phosphate group of the nucleotide being added and which of the following atoms or molecules of the last
nucleotide in the DNA strand?
a) The 5’ phosphate group.
c) The 3’ OH.
b) C6.
d) A nitrogen from the nitrogen-containing base.

A

c) The 3’ OH.

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3
Q

**________ Model: replicated DNA molecules have one old/parental strand & one newly-built strand.
**Old/parental strands separate & act as templates to synthesize new DNA that’s complementary to it.

A

**Semi-Conservative Model: replicated DNA molecules have one old/parental strand & one newly-built strand.
**Old/parental strands separate & act as templates to synthesize new DNA that’s complementary to it.

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4
Q

The Meselson-Stahl experiment demonstrated that DNA replication produces new molecules of DNA each containing…

A

one parental (old) strand and one newly synthesized strand.

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5
Q

This enzyme relieves DNA supercoiling ahead of the replication fork.

A

Topoisomerase

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6
Q

This enzyme unwinds the DNA double helix at the replication fork.

A

Helicase

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7
Q

These proteins bind to and stabilize single-stranded DNA.

A

Single-Stranded Binding Protein

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8
Q

This enzyme creates RNA primers to start DNA synthesis.

A

Primase

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9
Q

This enzyme builds a new DNA strand using the old strand as a template.

A

DNA Polymerase III (Prokaryotes)

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10
Q

This enzyme replaces RNA primers with DNA.

A

DNA Polymerase I

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11
Q

This enzyme joins Okazaki fragments on the lagging strand.

A

DNA ligase

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12
Q

DNA replication begins at specific DNA sequences called the _______________ of Replication (ORI).

A

origin

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13
Q

Prokaryotes have small _________________ chromosomes with just _____ ORI

A

circular; one

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14
Q

Eukaryotes have large __________________ chromosomes with ____________________ ORI

A

linear; multiple.

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15
Q

_______ relieves strain caused by DNA supercoiling. Supercoiling can hinder DNA replication.


A

Topoisomerase relieves strain caused by DNA supercoiling. Supercoiling can hinder DNA replication.


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16
Q

Helicase breaks ____________________ bonds to create ______________-stranded DNA.

A

hydrogen; single

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17
Q

________prevent reannealing of separated strands.

A

Single-Strand Binding Proteins (SSB) prevent reannealing of separated strands.

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18
Q

The primary enzymes responsible for building new DNA strands are

A

DNA polymerase

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19
Q

New DNA strands are built in the ______ ➝ ______ direction, elongating from the free 3’ ______ group.


A

5’; 3’; OH

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20
Q

In prokaryotes, DNA Polymerase ________ is the primary enzyme for elongation.

A

III

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21
Q

All DNA polymerases require two things: a ____________ strand and a ____________.

A

template; primer

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22
Q

The primer is a small RNA molecule built by the enzyme _______________.

A

primase

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23
Q

Upon separation, there are ___ single-stranded DNA molecules at each fork.
**The _____ strand is replicated continuously with the movement of the replication fork.
**The ____ strand is replicated in the opposite direction of the fork.

**The _____ strand forms small segments called _____ fragments.

**_____ fragments are joined together by DNA ____.
**Only the _____ strand requires multiple RNA primers.


A

Upon separation, there are two single-stranded DNA molecules at each fork.
**The leading strand is replicated continuously with the movement of the replication fork.
**The lagging strand is replicated in the opposite direction of the fork.

**The lagging strand forms small segments called Okazaki fragments.

**Okazaki fragments are joined together by DNA ligase.
**Only the lagging strand requires multiple RNA primers.


24
Q

An enzymes that Relieving strain in the DNA ahead of the replication fork

A

topoisomerase

25
The ____ strand is synthesized in the same direction as fork movement, _____ in the opposite
The leading strand is synthesized in the same direction as fork movement, lagging in the opposite
26
Several proteins participate in the unwinding and stabilization of DNA during DNA replication: 1. 2. 3.
1. Topoisomerase (DNA Gyrase) 2. Helicase 3. Single-Stranded Binding Proteins
27
cuts & rejoins DNA to relieve strain caused by DNA supercoiling.
topisomerase
28
Topoisomerase: ______ can impede DNA replication & must be relieved for DNA replication to proceed.
supercoiling
29
unwinds DNA by breaking hydrogen bonds (creating single-stranded DNA).
helicase
30
prevent reannealing & degradation of each separated DNA strand.
Single-Strand Binding Proteins (SSBs)
31
Relieving strain in the DNA ahead of the replication fork caused by the untwisting of the double helix.
the function of the enzyme topoisomerase in DNA replication
32
The primary enzyme responsible for building new DNA strands are ________. ☐ Organisms contain multiple types of ______ with slightly different functions.
DNA polymerases
33
New DNA strands always built in the 5' → 3' direction (elongating from its free 3’ OH group).
New DNA strands always built in the 5' → 3' direction (elongating from its free 3’ OH group).
34
In prokaryotes, DNA Polymerase III is the primary enzyme for elongating/building new DNA strands.
In prokaryotes, DNA Polymerase III is the primary enzyme for elongating/building new DNA strands.
35
All DNA Polymerases have two central requirements: 1. a template: the original/parent DNA strand that acts as a guide for building new strands. 2. a primer: small RNA molecule that acts as the starting point for DNA polymerase. ☐ Primase enzyme builds RNA primers. ☐ Ultimately the RNA primer is converted to DNA to be part of newly built DNA strand.
All DNA Polymerases have two central requirements: 1. a template: the original/parent DNA strand that acts as a guide for building new strands. 2. a primer: small RNA molecule that acts as the starting point for DNA polymerase. ☐ Primase enzyme builds RNA primers. ☐ Ultimately the RNA primer is converted to DNA to be part of newly built DNA strand.
36
Upon separation of the DNA, at each replication fork, there are two single-stranded DNA molecules:
Leading DNA Strand Lagging DNA Strand
37
_____: continuous replication in same direction as the replication fork movement. ☐ Only one RNA primer is required for replication of the leading strand.
Leading DNA Strand
38
_____: discontinuous replication in opposite direction as replication fork movement. ☐ Replicates in multiple, small segments (Okazaki fragments) that each require an RNA primer. ☐ Okazaki fragments are eventually covalently annealed by DNA ligase.
Lagging DNA Strand
39
Which is involved in replicating the lagging strand of DNA, but is not involved in leading strand replication? a) Ribosome. b) RNA primer. c) DNA polymerase. d) Okazaki fragments.
d) Okazaki fragments.
40
The DNA strands run antiparallel to each other and the DNA polymerase can only add nucleotides to the 3' end of the growing strand.
The DNA strands run antiparallel to each other and the DNA polymerase can only add nucleotides to the 3' end of the growing strand.
41
The ends of linear chromosomes
Telomeres
42
What effect might low telomerase activity cause?

Cells age and begin to lose function
43
Which cells are most affected by telomere shortening?
Eukaryotic cells only
44
How might adding telomerase affect aging?
Telomerase stops telomere shortening and slows or stops cellular aging
45
*_____: Non-coding DNA, consisting of repeating sequences, at the tips or ends of eukaryotic chromosomes. *In many cells, _____ shorten with each round of DNA replication (linked to aging).
Telomeres
46
What enzyme removes RNA primers and replaces them with DNA?
DNA polymerase I
47
What enzyme breaks hydrogen bonds between DNA strands?
Helicase
48
During DNA replication, which enzyme catalyzes the elongation of new DNA by adding nucleotides to the 3' end?
DNA polymerase
49
______ has a proofreading ability allowing them to fix many errors.
DNA polymerases
50
8. ______ joins Okazaki fragments together on the lagging strand to create a single, new strand.
DNA Ligase
51
7. _____removes RNA primers & replaces them with DNA nucleotides.
DNA Polymerase I
52
6.______ adds nucleotides to the 3’ end of primers & continues elongation on both DNA strands.
DNA Polymerase III
53
5. ____ adds the RNA primer to the template DNA so that polymerase can start replicating. * Continuously adds primers to the lagging strand to make several Okazaki fragments.
Primase
54
4. _____ bind to the single-stranded DNA.
Single-Stranded-Binding proteins (SSBs)
55
3. ____ binds & unzips the two strands of the template DNA by breaking hydrogen bonds.
Helicase
56
2. _____ binds to the ORI & relieves the strain due to DNA supercoiling.
Topoisomerase
57
1. DNA Replication in prokaryotes can be simplified into 7 steps.
1. DNA Replication in prokaryotes can be simplified into 7 steps.