Specific targets of apoptosis
Thymocytes that recognize self antigens
Virus infected cells
Defective cells
Unnecessary cells during development: webbing between digits
Excess cells like neurons that fail to make appropriate connections
Cells that have exceeded their desired lifespan
Cancer cells (via therapeutic treatment)
Syndactyly
Two or more digits are fused together, can be soft tissue or even bones
Failure of apoptosis to remove the webbed digits that develop during fetal development
Morphology of Apoptosis
Chromatin condensation and DNA fragmentation by endonucleases to form a laddered appearance in electrophoresis
Progressive cell shrinkage by cytoskeleton degradation
Plasma membrane blebbing
Apoptotic bodies: membrane bound cell fragments, doesn’t result in inflammation, phagocytes recognize the DPPS to eat them
Diseases linked with excessive apoptosis
AIDS: progressive loss of T lymphocytes due to apoptosis
Alzheimer’s: some of the proteins in the amyloid plaques can trigger capases
Parkinson’s: mutation for inhibitor of apoptosis is linked to Parkinson’s
Stroke or ischemic injury
Toxic-induced diseases: alcohol can induce apoptosis in neurons and hepatocytes
Diseases linked with suppression of apoptosis
Autoimmune disorders: don’t remove self-reactive immune cells
Cancer: tumor growth can be stimulated by cell cycle proliferation or suppression of apoptosis
Three pathways of apoptosis
Intrinsic (mitochondrial dependent): triggered by cellular stress
Extrinsic (death receptor mediated): triggered by soluble factors
Granzyme B: triggered by lymphocyte recognition
Bcl-2 families
24 different family members that can be pro or anti-apoptotic, many regulator proteins to respond to different types of cellular stress, which is the primary trigger for the intrinsic pathway
BH1-4: anti-apoptotic domain (Bcl-2)
BH1-3: pro-apoptosis domain (Bax family)
BH3: pro-apoptosis (BH3-only family)
Bcl-2 Pathway
Caspases
Cysteine-dependent aspartyl-directed proteases
Synthesized as zymogens so need to be cleaved for activation
Initiators: activate other caspases in a cascade (2,8,9,10)
Effector/Executioners: do damage to the cellular structures that result in apoptosis (3,6,7)
Other 7 caspases involved in inflammation control, processing of cytokines, and not involved in apoptosis
Other apoptosis regulatory proteins
Inhibitors of Apoptosis (IAP): found in cytoplasm
Smac (DIABLO): promotes apoptosis, mitochondrial protein that is released with cytochrome C, binds to and inactivates IAPs
Non-caspase-mediated death
AIF: apoptosis-inducing factor
Located in the intermembrane space of mitochondria, released when mitochondria permeabilized by Bax/Bak
Travels to nucleus, induces nuclear chromatin condensation and DNA fragmentation
Extrinsic apoptosis pathway
Ligand binding to death receptors causes the cytoplasmic tails to bind the Fas-associated death domain (FADD), death receptors are part of the tumor necrosis factor (TNF) family of receptors
Death-inducing signaling complex (DISC): receptor tail, FADD, and procaspases 8 and 10
FADD has a death effector domain (DED) that recruits procaspase 8 and allows for its activation to caspase 8
Caspase 8 allows for cross talk between intrinsic and extrinsic pathways, is an initiator for caspases 3,6, and 7
Granzyme B
Serine protease that is released by cytotoxic T cells and NK cells, causes apoptosis of virally infected cells
Released with perforin, which helps it enter infected cells
Activates the BH3-only protein Bid by cleaving it, also directly activates executioner caspase 3 and initiator caspase 8
Tumor suppressor p53
Transcription factor that is upregulated in response to multiple types of cell damage like hypoxia
Upregulates transcription of BH3-only pro-apoptosis proteins like Bax to trigger the intrinsic apoptosis pathway
Interacts with Bax/Bak to promote their oligimerization and cause mitochondria permeability
Promotes transcription of various death receptors for the extrinsic apoptosis pathway
Upregulates TFs that are secreted by the cell and bind to survival cytokines, blocking the survival cytokine pathway and triggering apoptosis
Heteroplasmy
The differences in the ration of normal and abnormal mtDNA among cells in a particular tissue/organ
Threshold effect: certain ratio of normal:abnormal mitochondria must be crossed in order for symptoms to develop
Mitochondria dive and even fuse together, do so independent of host cell replication
Myoclonic Epilepsy Ragged-Red Fibers
MERRF
Defective respiratory enzyme function and ATP production
Mutation in tRNA Lys
Myoclonic Epilepsy with short stature, hearing loss, lactic acidosis
Ragged-red fibers present in muscle biopsies
3 functions of cristae
Part of intermembrane space that project into the matrix
Intermembrane Space
Contains enzymes like creating kinase, adenylate kinase (converts ATP and AMP to 2 ADP), and cytochrome C
Mitochondrial Damage
Multiple etiologies: trophies factor withdrawal, protein misfolding, DNA damage from radiation/ROS/toxins, drugs, anoxia
Multiple Disease states: psychiatric disorders, dementias, strokes, heart diseases, autoimmune disorders
Cytochrome c Oxidase
Complex IV
Site of cyanide, azide (NaN3), and CO toxicity
Cyanide and azide bind to Fe3+ in the heme a subunits
CO binds to the Fe2+ in the heme a3 subunits
Prevents the transport of electrons in the ETC, reduction of ETC transporters and loss of oxidized forms, loss of H+ gradient needed for ATP synthase
Na+/K+ Pump
Cell Swelling
Lumen diameter is smaller in swollen cells for the kidney tubules
Swollen cells have clear finely stained cytoplasm, normal cells have denser pink (eosinophilic) stain
Normal cells have central nucleus, swollen cells have peripheral nucleus
Proximal convoluted tubules have more mitochondria so more susceptible to hypoxia injury and swelling, while DCT and glomerulus don’t swell as easy
Mitochondria and rER can swell also
Due to mitochondrial damage that leads to decreased Na/K pump activity, Na+ and water come in while K+ leaves
4 Mechanisms of Intracellular Accumulations
Fatty liver or steatosis
Leads to defects in protein packaging, intracellular/extracellular transport, and/or exocytosis
Alpha1-antitrypsin
Lysosomal storage diseases
Accumulation of silica or carbon in occupational exposures
Steatosis
Normal liver is brown to dark red but fatty liver is enlarged and yellow
Hepatocytes have clear cytoplasmic vacuoles that look like soap bubbles, contain triglycerides
Caused by too much fat synthesis or inadequate transport (protein) leads to steatosis
Nucleus pushed to side of cell
Variably sized vacuoles due to merging
H&E stain gives clear vacuoles as an artifact, Oil Red O stain has red stain that binds to lipids