What is metabolism and why is it needed
What Is Excretion? + Example
– All chemical reactions in cells = metabolism.
– Metabolism produces waste products (e.g., carbon dioxide, nitrogenous waste).
– These substances are toxic if they accumulate → they can disrupt metabolic reactions and damage cells.
– The body must therefore remove them to maintain normal metabolism and homeostasis (keeps blood composition stable).
Excretion = the removal of unwanted products of cellular activity from the body such as Co2,urea and salts=metabolic waste products.
Example:
– Carbon dioxide is a waste product of respiration.
– Excess CO₂ is toxic.
– Mammals excrete CO₂ using the lungs; fish excrete it through gills → both act as excretory organs.
What are the main functions of the liver?
Key liver cells:
•Detoxification – breaks down metabolic waste, drugs, alcohol → converts them into harmless products for excretion.
•Bile synthesis – makes bile to emulsify fats (sent to gallbladder via bile duct).
•Carbohydrate metabolism – e.g. gluconeogenesis (conversion of glycogen → glucose when blood glucose is low).
•Protein metabolism – includes the ornithine cycle to convert ammonia → urea.
•Metabolism of amino acids, fats, and carbohydrates.
•Storage – iron, copper, and fat-soluble vitamins (A, D, E, K).
•Synthesis of plasma proteins – e.g. fibrinogen, prothrombin, albumin (affect osmotic pressure).
•Cholesterol synthesis – from acetyl-CoA.
•Phagocytosis of old RBCs – by Kupffer cells (produces bile pigments).
– Hepatocytes: main functional cells; metabolise nutrients, detoxify substances, and produce bile.(large nuclei lots of protein synthesis prominent Golgi-lots of processing n packaging , good at diving and lots of mitochondria-to absorb co2 n use it in resp.)
– Kupffer cells: macrophages that remove pathogens and debris from blood by breaking down old RBC’s.
How does the microscopic structure of the liver help it carry out its functions?
A liver lobule is a cylindrical unit made of hepatocytes arranged in radiating plates (rows) around a central vein.
•Each lobule has portal triads at its edges (branches of the hepatic artery, hepatic portal vein, and bile duct).
•Sinusoids run between the hepatocyte plates and drain into the central vein.
•Kupffer cells line the sinusoids and remove pathogens + old RBCs.
•Bile canaliculi lie between hepatocytes, draining bile from hepatocytes → bile ductules → bile duct.
•Sinusoids are wide + leaky, so blood flows slowly and is exposed to large surfaces of hepatocytes, maximising exchange.
•Mixing of blood from the hepatic artery & portal vein ensures hepatocytes receive both oxygen and nutrients/toxins for metabolism + detoxification.
•Hepatocyte microvilli project into the sinusoid space → increases surface area for absorption and secretion.
•Kupffer cells in sinusoid walls phagocytose bacteria + old RBCs, supporting immunity and bile pigment formation.
•Canaliculi between hepatocytes allow efficient bile secretion away from blood flow.
Examining tissue under a microscope
How are excess amino acids broken down in the liver?
How is ammonia from amino acid breakdown safely removed from the body?
– Deamination: Nitrogen-containing amino groups (-NH₂) are removed from amino acids, forming ammonia (NH₃) and organic acids(keto acid)
– Reaction: Amino acid +O2→ ammonia + keto acids
-ammonia highly toxic and soluble so as soon as it made it is converted for urea onto the next stage via orithine cycle.
– Organic acids:
– Respired to produce ATP
– Converted to carbohydrates/lipids and stored as glycogen/fat.
– Ornithine cycle: Ammonia reacts with CO₂ to form urea and water.
– Reaction: Ammonia + CO₂ → urea + water -
mitochondria (-nh3+co2)
Cytoplasm-(cycle completed forming urea)-less toxic n soluble.
-urea much less soluble n less toxic so safely stored before excretion as urine.
– Excretion: Urea is released into the blood from liver , filtered by the kidneys, and excreted in urine.
– This prevents the toxic accumulation of ammonia in the body.
What is detoxification in the liver and what example shows how metabolic waste is broken down?
How does the liver deal with excess paracetemol and insulin ?
•The liver breaks down harmful substances (e.g., alcohol, drugs, excess hormones) into less harmful compounds so they can be safely excreted and do not interrupt metabolic processes.
•This process is called detoxification.
•A key metabolic waste product, hydrogen peroxide (H₂O₂), is broken down by the enzyme catalase inside peroxisomes/hepatocytes.
•Catalase can break down 5 million molecules of H₂O₂ per minute, preventing cellular damage.
Paracetamol is a common painkiller that’s broken down by the liver.
Excess paracetamol in the blood can lead to liver and kidney failure.
Insulin
Insulin is a hormone that controls blood glucose concentration.
Insulin is also broken down by the liver as excess insulin can cause problems with blood sugar levels./hypoglycaemia.
What does the liver do when there is excess glucose in the blood?
The body needs glucose for energy. The liver converts excess glucose in the blood to glycogen in a process called glycogenesis.
The glycogen is then stored as granules in the liver cells until the glucose is needed for energy.
Ultrafiltration and selective reabsorption in the kidney
•Blood enters the kidney via the renal artery.
•Blood passes through capillaries in the cortex, where substances are filtered into surrounding tubules — this is ultrafiltration.
•Useful substances (e.g., glucose, water, ions) are reabsorbed back into the blood from the tubules in the cortex and medulla — this is selective reabsorption.
•Unwanted substances (e.g., urea) remain in the tubules and are transported via the ureter to the bladder for excretion as urine.
•Filtered blood leaves the kidney via the renal vein.
What are the nephrons
The long tubules along with the bundle of capillaries where the blood is filtered are called nephrons - there are around one million nephrons in each kidney.
There are millions of nephrons in each kidney
They have 2 vital roles :ultrafiltration
Selective reabsorption
Ultrafiltration
•Blood from the renal artery enters smaller arterioles in the cortex.
•Each arteriole splits into a glomerulus — a bundle of capillaries inside a hollow Bowman’s capsule.
•Afferent arteriole: brings blood into the glomerulus.
•Efferent arteriole: carries blood away from the glomerulus; smaller in diameter → creates high pressure.
•High pressure forces small molecules and ions (≤ 69,000 Da) such as water, ions, glucose, and urea out of the capillaries into the Bowman’s capsule — ultrafiltration takes place under pressure.
•Filtrate passes through three layers:
– Capillary endothelium
– Basement membrane
– Epithelium of Bowman’s capsule
•Large molecules (proteins, blood cells) remain in the blood.
•Filtrate continues along the nephron, with useful substances reabsorbed; final filtrate passes through the collecting duct to the ureter.
Selective reabsorption
Definition: Useful molecules, ions, and water are reabsorbed from the nephron back into the blood.
•Locations: PCT, loop of Henle, DCT, and collecting duct.
•Process:
1.Filtrate flows along the nephron tubules.
2.PCT (Proximal Convoluted Tubule):
•Microvilli provide large surface area; many mitochondria supply ATP.
•Glucose: facilitated diffusion initially, then active transport when gradient falls.
•Amino acids, vitamins, sodium, and some hormones: active transport.
•Chloride ions: passive movement.
•Water: osmosis, as blood has lower water potential than filtrate.
3.Loop of Henle:
•Further water reabsorption (osmosis) and sodium/potassium reabsorption to create medullary gradient.
4.DCT (Distal Convoluted Tubule):
•Balances water and ion levels; many mitochondria.
•Sodium actively reabsorbed if needed; chloride follows electrochemical gradient.
•Water can leave if ADH acts on tubule walls.
5.Collecting Duct:
•Determines final urine volume and concentration.
6.Urea: Some diffuses back into the blood.
7.Remaining filtrate: Becomes urine, passes along the ureter to the bladder.
What is the composition of urine and why?
Urine mainly contains water, dissolved salts, urea, and other substances such as hormones and excess vitamins.
• Proteins and blood cells are usually absent because they are too large to be filtered out of the blood.
• Glucose, amino acids, and vitamins are actively reabsorbed back into the blood, so they are not normally found in urine.
Kidney dissection
External examination
1.Look at the outside of the kidney - it’s covered with a thin, strong membrane called the renal capsule.
2.Beaneath the renal capsule is the outside of the cortex.
3.You’ll notice that part of the kidney is indented — this is the renal hilum and you’ll probably see tubes coming from here.
4.Have a look at the tubes and see if you can identify them as the renal vein, renalartery and ureter. You might need to look inside the blood vessels to identify them - the wall of the artery will be thicker than the wall of the vein
The ureter is likely to have the most adipose (fatty) tissue around it.
5.Draw a sketch of the outside of the kidney and add clear labels
Kidney dissection internal examination
1.Cut the kidney in half lengthways from one side.
Split it open and have a look at the structures inside.
2. You should notice that the cortex appears dense and grainy and is a lighter shade than the medulla.
3. In the medulla you will find many cone-shaped structures - these are renal pyramids. They appear stripy because they contain straight sections of nephrons (loops of Henle and collecting ducts).
4. In-between the pyramids are renal columns.
5. You may see hollow cavities leading from the base of the renal pyramids -renal calyces
6.these lead to a larger hollow structure called the renal pelvis which connects to the ureter
7.draw a sketch to show structures you see inside the kidneys
Kidney histology
Regulation of water potential
the blood (and so the water potential of the blood) needs to be kept constant.
Mammals excrete urea (and other waste products) in solution, which means water is lost during excretion. Water is also lost in sweat. The kidneys regulate the water potential of the blood (and urine), so the body has just the right amount of water:
• If the water potential of the blood is too low the body is dehydrated), more water is reabsorbed by osmosis into the blood from the tubules of the nephrons. This means the urine is more concentrated, so less water is lost during excretion.
• If the water potential of the blood is too high (the body is too hydrated), less water is reabsorbed by osmosis into the blood from the tubules of the nephrons. This means the urine is more dilute, so more water is lost during excretion (see next page).
Regulation of the water potential of the blood takes place in the middle and last parts of the nephron - the loop of Henle, the distal convoluted tubule (DCT) and the collecting duct (see below). The volume of water reabsorbed is controlled by hormones (see next page).
Loop of henle
The Loop of Henle is a U-shaped tube in the nephron consisting of a descending limb, which goes down through the kidney medulla, makes a hairpin bend, and returns to the cortex as the ascending limb. Its main role is water conservation and osmoregulation, allowing mammals to produce urine more concentrated than blood.
The loop sets up the countercurrent multiplier mechanism, which makes the medulla highly concentrated with salts. As a result, water in the collecting duct moves by osmosis from the filtrate back into the blood, forming hypertonic (concentrated) urine.
How does he countercurrent multiplier mechanism work
Loop of henle length in different animals
Different animals have loops of Henle of varying lengths, which affects how much water they can reabsorb from the filtrate. The longer the loop of Henle, the more water can be reabsorbed.
A longer ascending limb actively pumps more salts and ions into the medulla, creating a very low water potential. This produces a highly concentrated medulla, so more water moves out of the nephron and collecting duct into the surrounding capillaries, resulting in very concentrated urine. This is an example of the hairpin countercurrent multiplier mechanism.
Animals living in environments with limited water have evolved long loops of Henle to conserve water. Examples include the fennec fox, desert kangaroo rat, and camel, which produce small volumes of concentrated urine to minimize water loss.
In contrast, frogs and toads have no loop of Henle and cannot produce concentrated urine. They live in wet environments, so conserving water is not necessary.
If you want, I can also turn this into a flashcard-ready version that would be phrased as a question and answer, perfect for exams. Do you want me to do that next?
What is kidney failure
Kidney failure is when the kidneys can’t carry out their normal functions because they don’t work properly. Kidney failure can be detected by measuring the glomerular filtration rate (FR) - this is the rate at which blood is filtered from the glomerulus into the Bowman’s capsule. A rate lower than the normal range indicates the kidneys aren’t working properly. Kidney failure can be caused by many things, including kidney infections and high blood pressure.
What can kidney failure caused by
Kidney infections
Kidney infections can cause inflammation (swelling) of the kidneys, which can damage the cells. This interferes with filtering in the Bowman’s capsules, or with reabsorption in the other parts of the nephrons.
High blood pressure
High blood pressure can damage the glomeruli. The blood in the glomeruli is already under high pressure but the capillaries can be damaged if the blood pressure gets too high. This means larger molecules like proteins can get through the capillary walls and into the urine.
What can kidney failure lead to
Waste products that the kidneys would normally remove (e.g. urea begin to build up in the blood. Too much urea in the blood causes weight loss and vomiting.
• Fluid starts to accumulate in the tissues because the kidneys can’t remove excess water from the blood. This causes parts of the body to swell, e.g. the person’s legs, face and abdomen can swell up.
• The balance of electrolytes (ions) in the body becomes, well, unbalanced. The blood may become too acidic, and an imbalance of calcium and phosphate can lead to brittle bones. Salt build-up may cause more water retention.
• Long-term kidney failure causes anaemia — a lack of haemoglobin in the blood.
If these can’t be controlled could lead to death
Treating kidney failure
When the kidneys can no longer function (i.e. they’ve totally failed), a person is unable to survive without treatment. There are two main treatment options
— renal dialysis or a kidney transplant