Bacteriology Flashcards
Belong to the Protista kingdom
Include some eukaryotes, prokaryotes, viruses, viroids, prions
Classified according to structure, chemical composition, and biosynthetic and genetic organization
Microorganisms
Organ of locomotion for prokaryotes
Flagella
Organ of locomotion for eukaryotes
Flagella and pseudopodia
Cell wall less bacteria
Mycoplasma
Ureaplasma
Fungal cell membrane
Ergosterol
Provides shape to bacteria
Cell wall
In bacteria, energy production happen in
Cell membrane
Not cells, not visible to light microscope
Viruses
Bacterial viruses
Bacteriophages or phages
Single-stranded, covalently closed, circular RNA molecules that exists as base-paired, rodlike structures
Cause plant diseases
Viroids
RNA of the hepatitis D virus is ____
Viroid-like
Abnormal proteins
Prions
Infectious particles associated with subacute progressive, degenerative diseases of the CNS (Creutzfeldt-Jacob Disease)
Prions
Alter conformations of a normal cellular protein that autocatalytically form more copies of itself.
Prions
Spiral Sjape
Spirochetes
Borrelia
Leptospira
Treponema
Straight rod or with single rigid curve
Vibrio
Rigid helical rod
Spirillium
Flesuous helical rod
Spirochete
Vary in size and shape
Pleomorphic
ex: Bacterioides, Mycoplasma, Ureaplasma
Example of antibiotic that affect cell wall biosynthesis and may alter a bacteria’s shape
Penicillin
Coffee-bean shaped diplococci
Neisseria
Lancet-shaped diplococci
S. pneumoniae
Palisades
Corynebacterium
Smallest pathogenic bacillus
Haemophilus
Largest pathogenic bacillus
Bacillus anthracis
Mucilaginous envelop that surrounds some bacteria (if present, considered as virulence factor)
Capsule
Structure surrounding a bacterial cell and is external to the cell wall
Polysaccharide
Bacteria without polysaccharide, instead possess poly-D-glutamic acid capsule
Bacillus anthracis
Property of capsule that may increase virulence by preventing phagocytosis
Immunoevasion
Basis of serotying by Quelling reaction: specific capsular swelling with type-specific antiserum
Antigenic
Encapsulated organisms
“Some Nasty Killers Have Some Capsule Protection”
Streptococcus pneumoniae
Neisseria meningitidis
Klebsiella pneumoniae
Haemophilus influenzae
Salmonella typhi
Cryptococcus neoformans
Pseudomonas aeruginosa
Special staining methods
Hiss stain
India ink stain
Loosely arranged extracellular material that surrounds bacterial cells
Slime layer
Found in biofilms
Slime layer
Used by some bacteria to adhere to surfaces like catheters (S. epidermidis)
Biofilm
Organized layer
Capsules
Also known as the peptidoglycan later or murein layer
Cell wall
Functions of _____
Protects bacteria against osmotic pressure
Gives shape to the bacteria
Confer the gram reaction of the bacteria
Usual target of anti-microbial drugs (penicillins, cephalosporins)
Cell wall
Thicker, teichoic acid
Gram-positive cell wall
Composed of a very thick protective peptidoglycan (murein) layer
Gram-positive cell wall
G+ cell wall consists of glycan chains of alternating ___ and ___
NAG and NAM
Negatively charged and contributes to the negativity of the cell wall
Teichoic acid
It may also bind and regulate the movement of cations into and out of the cell
Teichoic acid
Have an outer membrane
Gram (-) cell wall
Composed of a thin layer of peptidoglycan, No teichoic acid
Gram - negative cell wall
Between outer membrane and gram negative cell wall
Periplasma space
Has a gram positive reaction
Acid-fast cell wall
Concurs resistance to drying and chemicals
Acid-fast cell wall
Contain a waxy layer of phospholipids and fatty acids (hydroxymethoxy acid or mycolic acid) bound to the exterior of the cell wall
Acid-fast cell wall
Acid-fast organisms
“No MILC”
Nocardia
Mycobacterium
Isospora
Legionella micdadei
Cryptosporidium
Other clinically relevant organisms with cell wall containing mycolic acid
Nocardia
Rhodococcus
Gordonia
Tsukamurella
Corynebacterium
Bacteria without cell walls contain ___
Sterols
Examples of bacteria without cell wall
Mycoplasma, ureaplasma
Present only in gram-negative bacteria
outer membrane
Composed of proteins, phospholipids, and lipopolysaccharide
Outer membrane
Lipopolysaccharide is comprised of:
Lipid A
Core polysaccharide
O polysaccharide
Vital to evade the host defenses;
it contributes to the negative charge of the bacterial surface
Lipopolysaccharide
It comprises endotoxin
Lipopolysaccharide
Essential component of both Gram pos and gram neg bacteria
Cell membrane
Has affinity for basic dyes
Metachromatic Granules
Site of bacterial energy metabolism
Cell membrane
Special stains for metachromatic granules
Albert
Neisser
Ponder
Methylene Blue
Babes Ernst Granules
Corynebacterium diphtheriae
“Corny mo, Babe”
Much granules
Mycobacterium tuberculosis
Bipolar granules
Yersinia pestis
“Safety pin appearance”
Function as a survival response to certain adverse nutritional conditions, such as depletion of a certain source
Endospore
Highly resistant to desiccation, heat, and various chemicals
The last structure to be destroyed
Endospores
Basis of QC in autoclaving
Endospores
Endospores are helpful in identifying some species of bacteria like
Bacillus and Clostridium
Terminal spore
Clostridium tetani
Subterminal spore
Clostridium botulinum
Central spore
Bacillus anthracis
Boxcar appearance
Bacillus anthracis
Possess a core that contains many cell components, a spore wall, a cortex, a coat, and an exosporium
Endospore
The core of endospore contains ____, which aids in heat resistance within the core
Calcium dipicolinate
Endospore stains
Schaeffer-Fulton stain (green)
Doemer’s stain
Wirtz-Conklin
True or False.
Endospore germinate under favorable nutritional conditions after an activation process that involves damage to the spore coat. They are not reproductive structures
True
Gives motility to bacteria. For locomotion
Flagella
No flagella
Atrichous
Single flagellum at each pole
Monotrichous
Examples of Monotrichous
Vibrio
Campylobacter
Helicobacter
Pseudomonas aeruginosa
NO Enterobacteriaceae are monotrichous
Single flagellum at each pole
Amphitrichous
Tuft of flagella at one or both poles
Lophotrichous
Flagella all over organism
Peritrichous
Examples of Peritrichous
Enterobacteriaceae, except SKY (Shigella, Klebsiella, Yersinia)
Most common flagella in pathogens
Peritrichous and monotrichous
Demonstrate motility at ____ hours growth
18
Often, motility can be best seen at ____
25 deg C (35-37 deg C may be inhhibitory)
Component of flagellar stains
Tannic acid
Examples of flagellar stains
Leifson
Fisher and Conn
Gray
Precipitates and coats flagella
Tannic acid
AKA axial filament
Found in spirochetes
Endoflagella
Tumbling motility
Listeria monocytogenes
Darting motility
Campylobacter
Gliding motility
Capnocytophaga
Swarming motility
Proteus
Hair-like extensions that extent into the environment
Pili/Fimbrae
Type of pili that serves as an attachment
Common pili
Pili for conjugation
Sex/conjugate pili
“bacterial sex”
Bacteria reproduce by asexual reproduction via
Binary fission
4 phases of the growth cycle
Lag phase
Logarithmnic/exponential phase
Stationary phase
Decline and death
Little or no multiplication but enzymes are very active. A period of adjustment and adaptation
Lag phase
Organisms grow at maximum rate (exponential rate).
Most sensitive to antimicrobials
Logarithmic phase
Plateau-growth ceases because nutrients are exhausted or toxic metabolic products have accumulated
Stationary phase.
Direct microscopic count may remain constant but viable count slowly decreases
Decline and death
3 mechanisms of bacterial gene transfer
- Transformation
- Conjugation
- Transduction
Direct uptake DNA from surrounding environment
-Allows evolution of DNA over time
-Introduce genes to bacteria for replication
Transformation
Transfer from one cell to another via pillus; requires physical contact of 2 organismsm
-DNA transferred via plasmids
Conjugation
Small DNA molecules within a cell
Plasmids
Transfer of DNA via a bacteriophage (virus that infects bacteria)
Transduction
Nuclear material enters bacteria
-Multiplies, lyses cells
-Releases progeny viruses
Lytic cycle
Nuclear material enters cell
-Incorporates in host DNA
-May later become excised then enter lytic phase
-Genes for some bacterial toxins are transferred to non-toxic strains via lysogeny
Lysogenic cycle
Phages that replicate only via the lytic cycle
Virulent
Phages that replicate using lytic cycle and lysogenic cycle
Temperate
“jumping genes”
DNA segments within bacterial DNA
Transposons
A mechanism of transfer of resistance to antibiotics; can even transfer antibiotic resistance genes between 2 different bacterial species
Transposition
Require preformed organic compounds for growth, includes most medical important bacteria
Heterotrophs/Organotrophs
Do not require preformed organic compounds for growth because they can synthesize them from inorganic compounds and carbon dioxide
Autotrophs/Lithotrophs
Use light as energy source
Phototrophs
Use redox potential generated by various chemical reactions
Chemotrophs
Grows in the presence of atmospheric (free) oxygen)
Aerobe
Cannot grow in the absence of free oxygen, which serves as final electron acceptor. Contain superoxide dismutase, which protects from the toxic oxygen
Obligate aerobe
Requires reduced amount of free oxygen (5% O2)
Microaerophile
Grows in the absence of atmospheric oxygen
Anaerobe
Cannot grow in the presence of atmospheric oxygen;
lack superoxide dismutase, catalase, and cytochrome-C oxidase (enzymes that destroy toxic products of oxygen metabolism)
Use nitrates, sulfates, and carbonates as final electron acceptor
Obligate anaerobes
Fundamentally an aerobe but can grow in the absence of atmospheric oxygen
Facultative anaerobe
Does not grow well, but survives in the presence of atmospheric oxygen
Aerotolerant
Obligate Aerobes
Mycobacterium
Corynebacterium
P. aeruginosa
Nocardia
Bacillus
“May Cash sa PNB”
Obligate Anaerobes
Actinomyces
Bacteroides
Clostridium
Fusobacterium
Eubacterium
Prevotella
Aerotolerant
Lactobacillus
Propionibacterium
Microaerophiles
Campylobacter
Helicobacter
Facultative anaerobe
Most pathogenic bacteria are facultative anaerobes
Growth of obligate aerobes in thioglycollate broth
growth at the top
Growth of facultative anaerobes and aerotolerant anaerobe in thioglycollate broth
growth all throughout
growth of obligate anaerobe in thioglycollate broth
growth at the bottom
Growth enhanced by the increased CO2 (5-10% CO2)
Capnophile
Capnophiles
Streptococcus
Campylobacter
Haemophilus
Helicobacter
Moraxella catarrhalis
Mycobacterium
Pathogenic Neisseria
“Sa Camp Here in Heaven, May Money Po!”
Grow below 10 deg C
Ex: L. monocytogenes , blood bank contaminants
Psychrophilic
Grow at 20 - 40 deg C (best at 30 - 37 deg C).
Most pathogens
Mesophilic
grow at 50 -55 deg C (basis of test for effective autoclaving
Thermophilic
Specimen is placed in the refrigerator
-inhibits growth of bacteria except L. monocytogenes and Y. enterocolitica
Cold enrichment technique
Lactobacillus grows in a special medium called __
Tomato juice agar
Vibrio species are alkalophiles and grows in ___
Alkaline Peptone Water: enrichment medium and
TCBS: differential medium
total absence of viable microorganisms as assessed by no growth on any medium
Sterility
kills bacteria
Bactericidal
inhibits growth of bacteria
Bacteriostatic
removal or killing or all microorganisms
sterilization
removal or killing of disease-causing microorganisms (inanimate objects)
Disinfection
any procedure that inhibits the growth and multiplication of microorganisms
Antisepsis
Method of sterilization and disinfection that coagulates protein
Moist heat
100 deg C for 15 - 30 minutes
-kills all vegetative organisms but not all spores or viruses
Boiling
Alternate heating (kills vegetative cells), incubation (spores germinate), heating
Fractionation
Flowing steam for 30 minutes on 3 successive days
Tyndallization
75 - 80 deg C for 2 hours on 3 successive days
Inspissation
Used to sterilize media containing milk or serum
Fractionation
Uses steam under pressure
121 deg C at 15 psi for 15 - 30 minutes
Autoclaving
Most effective method of sterilization
Autoclaving
Used to raise temperature in autoclaving
pressure
Kills organisms including viruses and spores;
Used whenever possible to sterilize liquid media, instruments, glassware
Autoclaving
Quality control in autoclaving
spores of Bacillus stearrothermophilus incubated at 56 deg C
recommended for milk and dairy products
Pasteurization
Low temperature holding
63 deg C for 30 minutes
Batch pasteurization
High temperature short time at 72 deg C for 15 seconds
Flash Pasteurization
Kills by oxidation
Dry heat
Temp and duration for oven using dry heat
160 - 180 deg C for 1 -2 hours
Quality control of dry heat
spores of Bacillus subtilis incubated at 35 - 37 deg C
To sterilize inoculating loop
Flame
Size of membrane filter that has 100% bacterial sterility
0.22 um
For urea broth and sugar fermentation broth
Filtration
UV light
Radiation
Cold sterilization
Used for materials that cannot be autoclaved
Ethylene oxide gas
Quality control for ethylene oxide gas
spores of Bacillus subtilis incubated at 35 - 37 deg C
Destroys vegetative forms on inanimate objects
Disinfectant
denature proteins; activity reduced by organic matter (cresol less affected)
Phenolics
Inactivate bacteria by binding with their hydrophobic and lipophilic groups, interacting with the cell membrane to alter metabolic properties and permeability
Quaternary ammoniums (quats)
oxidizes organic matter
Chlorine
safe for delicate lensed instruments; usually poor activity against Pseudomonas
2% aqueous glutaraldehyde
a dipheyl cationic analog that is useful for topical disinfectant
Chlorhexidine
5 types of disinfectants
- Quaternary ammoniums
- Phenolics
- Chlorine
- 2% aqueous glutaraldehyde
- Chlorhexidine
Phenol is used as a disinfectant standard that is expressed as a ___.
This compares the rate of the minimal sterilizing concentration of phenol to that of the test compound for a particular organism
phenol coefficient
The endpoint of phenol coefficient is the lowest concentration that kills test organisms in ___
10 minutes at 20 deg C
Test organisms for phenol coefficient
Salmonella typhi and Staphylococcus aures
agent used on living tissue
antiseptic
3 types of antiseptics
- Alcohol
- Tincture (alcoholic) iodine
- Iodophor
__ is necessary for protein denaturation
Water
___ is the major form of alcohol used in hospitals
Isopropyl alcohol (90-95%)
Tincture (alcoholic) iodine is composed of:
2% solution of aqueous alcohol containing potassium iodide
Iodophor is composed of:
Iodine + detergent (e.g. povidone-iodine)
Biologic indicators
1. Autoclave:
2. Ionizing radiation:
3. Dry heat oven:
4. Ethylene oxide:
Biologic indicators
1. Autoclave: Bacillus stearothermophilus
2. Ionizing radiation: Bacillus pumilis
3. Dry heat oven: Bacillus subtilis var niger
4. Ethylene oxide: Bacillus subtilis var globigii
Designed to protect the operator, the laboratory environment, and work materials from exposure to infectious aerosols and splashes that may be generated when manipulating materials containing infectious agents
Biological safety cabinets
Open front BSC. Has HEPA filter. Filtration happens once.
Provides minimal personnel protection. Does not protect work surface
Class I BSC
Laminar flow cabinets with variable sash opening. Filtration happens twice. Most commonly used in hospital micro labs. Provides protection for worker and work surface
Class II BSC
Completely enclosed. Negative pressure. has gloves. Provides maximum protection
Class III BSC
Biosafety level not known to cause disease in healthy adults
Level I
Biosafety level: common pathogens
Level 2
Biosafety level: causes serious lethal disease via inhalation. Effective treatment available
Level III
Biosafety level that causes life-threatening disease. No vaccine
Level IV
Found in the cell wall of S. aureus
-inhibits phagocytosis by binding Fc portion of IgG
Protein A
Enzymes that cleave IgA,
allows colonization of mucosal surfaces
-produced by S. pneumoniae, H. influenzae, N. gonorrhoeae, N. meningitidis
“SHiNe”
IgA protease
Found as a surface molecule of group A streptococcus,
prevents phagocytosis
M protein
Only in gram neg bacteria
-lipopolysaccharide
-released when bacteria die
-heat resistant
Endotoxin
Like LPS but lacks O antigen
Endotoxin activity
Found on non-enteric gram negs (N. meningitidis is most important example)
Lipooligosaccharide
Sore throat with membrane, swollen nodes
-Inactivates elongation factor (EF-2), which is necessary for protein synthesis.
Corynebacterium diphtheriae
Causes many types of infection (skin infections, sepsis, pneumoniae)
-same mechanism as diphtheria toxin
Pseudomonas aeruginosa
(Exotoxin)
Causes infectious diarrhea
-invasion of GI mucosal cells is still the main cause of diseases;
-nontoxigenic strain causes significant disease
Shigella
(Shiga toxin)
Strain of E. coli that produce “shiga-like” toxin;
Typically cause bloody diarrhea
-can also cause hemolytic uremic syndrome (HUS) when toxin reaches system circulation
-Classic serotype is E.coli O157:H7
Enterohemorrhagic E. coli (EHEC)
Shiga-like toxin
aka Traveller’s diarrhea
-causes watery diarrhea
Enterotoxigenic E. coli (ETEC)
Heat labile toxin (LT)
Heat stable toxin (ST)
3 proteins of Anthrax
Protective antigen (PA)
Lethal factor (LF)
Edema factor (EF)
2 proteins of B. anthracis that causes edema toxin
Protein antigen
Edema factor
Causes “rice-water” diarrhea
that leads to dehydration, electrolyte losses, and shock
Vibrio cholerae
(Cholera toxin)
Causes whooping cough
Bordetella pertusis
Preferred specimen for the determination of Bordetella pertusis (whooping cough)
Nasopharyngeal swab
Works in spinal cord (Renshaw cells)
- results in spastic muscle paralysis
Clostridium tetani
(Tetanospasmin)
Works at neuromuscular junctions
-results in muscles floppy (Flaccid paralysis)
-In babies: Floppy Baby Syndrome ( contaminated honey)
Clostridium botulinum
(Botulinum toxin)
Causes Gas Gangrene
Phospholipase C enzyme
Clostridium perfringens
(Alpha toxin)
“Cytolysin” (lysis cells)
-Responsible for beta hemolysis
-Trigger production of anti-streptolysin O (ASO)
-Can be usefu lin suspected rheumatic heart disease or post strep glomerulonephritis
Streptococcus pyogenes (Streptolysin O)
Activate a MASSIVE number of T-cells (2-20% T cells)
Superantigens
2 examples of superantigens
TSST-1 (S. aureus)
Pyrogenic exotoxin A or C (S. pyogenes)
Reagents in Gram staining
- Primary stain - Crystal Violet
- Mordant - Gram’s Iodine
- Decolorizer - Alcohol-Acetone
- Secondary stain - Safranin
“VIAS”
Bacteria with thick cell walls containing teichoic acid retain the crystal violet-iodine complex dye after decolorization.
Gram Stain
Primary stain binds to mycolic acid in the cell walls of mycobacteria and is retained after the decolorizing step with acid-alcohol
Acid-Fast Stain
Reagents in AF Staining
- Primary Stain - Carbol fuchsin
- Mordant - Heat or phenol
- Decolorizer - Acid-alcohol
- Methylene Blue
Size of AFB smear
at least like a thumb size or
2 cm x 3cm
Fluorochrome dye that stains both gram positive and gram negative bacteria, living or dead.
-Binds to the nucleic acid of the cell and fluoresces as a bright orange when fluorescent microscope is used.
Acridine Orange
Fluorochrome that binds to chitin in fungal cell walls.
-Fluoresces as a bright apple-green or blue-white, allowing visualization of fungal structures with a fluorescent microscope
Calcoflour White
Traditionally has been used to stain C. diphtheriae for observation of metachromatic granules
Methylene Blue
Used to stain the cell walls of medically important fungi grown in slide culture
Lactophenol Cotton Blue
Negative stain used to visualize capsules surrounding certain yeasts, such as Cryptococcus spp
India Ink
Primary stain: malachite green (heated to steaming for about 5 minutes)
Counterstain: Safranin
Endospores appear green with pink-appearing or red-appearing bacterial cells
Endospore stain
Fluorescein-labeled antibodies made from antisera produced by injecting animals with whole organisms or complex antigen mixtures
- Resultant polyclonal antibodies may react with multiple antigens on the organism that was injected and may also cross-react with antigens or other microorganisms or possibly with human cells in the specimen
Immunofluorescent antibody (IF) staining
IF staining is useful in confirming the presence of specific organisms such as
Bordetella pertusis or Legionella pneumophila
Percentage of agar in semi-solid media
0.5 - 1%
Percentage of agar in liquefiable solid media
2-3%
Tissue culture system from African green monkey
Vero cell
Tissue culture system from mouse cell line
Mccoy cell
Tissue culture system from Lung carcinoma
A549 cell
Tissue culture system from Cervical carcinoma
Hela cell
Tissue culture system from laryngeal carcinoma
Hep-2 cell
Supports the growth of non-fastidious organism
-Nutrient agar or broth; Trypticase soy agar or broth
Simple or General Purpose
Select the growth of particular organism and prevents other organism thru inhibitors
Selective
Selective medium for Mycobacterium tuberculosis
Lowenstein Jensen
Selective medium for Gram positive microorganism
Phenylethyl alcohol
Selective media for Neisseria gonorrhea
Thayer Martin, Martin Lewis, New York City
Culture media that contains nutrient supplements
Enriched
Enriched media that contains 5% defibrinated Sheep blood (Horse/rabbit)
Blood agar plate
Enriched medium for Haemophilus
Chocolate agar plate
Preparation of Chocolate agar plate
-Add blood while base medium is still hot to lyse the RBCs
-Release X and V factors
X factor
Hemin
V Factor
NAD
Can enhance the growth of microorganism
Enrichment
Enrichment medium for Vibrio
Alkaline Peptone Water
Enrichment media for Salmonella and Shigella
Selenite and Tetrathionate
Allow certain types of organisms to grow and differentiate, and inhibit the growth of other organisms
Selective-Differential
Selective-Differential medium for S. aureus and S. epidermidis/saprophyticus
Mannitol Salt Agar
Selective-Differential medium for Vibrio spp
Thiosulfate Citrate Bile Salt
Provides distinct colonial appearance of microorganisms to know their identification
Differential
Differential media that contains 3 sugars (lac, gluc, suc)
Triple Sugar Iron
Standard medium for specimens
Blood agar (usually made with 5% sheep blood)