Genetics Flashcards

1
Q

What is nonsense mediated decay?

A

Getting rid of proteins produced that don’t conform to normal standards (either stop being too early or too late)

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2
Q

What is polygenic risk?

A

Multiple genes contributing towards familiar risk

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3
Q

What is leucocornea?

A

White eye in retinoblastoma

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4
Q

What happens in hereditary non-polyposis colon cancer? (HNPCC/lynch syndrome)

A

Mutation in mistmatch repair genes
Excess of cancers in adenoma carincoma sequence
Early CRC
Effects proximal colon

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5
Q

What is a germline mutation?

A

Where mutation is present in egg/sperm and are henceforth heredtary
Cause cancer family syndromes

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6
Q

What is an oncogne?

A

A gene that controls cell processes that, if it mutates, will be enough to start the cancer process

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7
Q

What are the lifetime cancer risks of the BRCA genes?

A

Breast - 60-80% (early onset)
Secondary primary breast cancer - 40-60%
Ovarian 20-50%
Increased risk of prostate + breast cancer in men

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8
Q

When do you suspect hereditary cancer syndrome?

A
Cancer in 2+ relatives
Early age of diagnosis
Multiple primary tumours
Bilateral or multiple rare cancers
Charactersitc pattern of tumours
Evidence of autosomal dominant transmission
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9
Q

What are the options for breast cancer surveillance?

A

Early clinical surveillance 5yrs before 1st cancer in family
Annual clinical breast exams
Mammography Every 2 yrs from 35-40, yearly from 40-50
Every 18 months if high risk from 50

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10
Q

What is the benefit of a prophylatic oophrectomy?

A

Eliminates risk of primary ovarian cancer (peritoneal cancers can still occur)
Risk of subsequent BRCA halved

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11
Q

How is colorectal cancer surveyed in lynch syndrmoe?

A

Colonoscopy every 2 years from 25 if high risk

If moderate risk once at 35 and once at 55

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12
Q

How is endometrial cancer screened for in lynch syndrome?

A

Transvaginal ultrasound

No recommendations

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13
Q

What are the limitations of genetic testing?

A

doesn’t detect all mutations
Continued risk of sporadic cancer
Efficacy of interventions variable
May result in psychosocial/economic harm

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14
Q

What cancers are associated with Li-Fraumeni syndrome?

A
Soft-tissue sarcoma
Osteosarcoma
Breast cancer
Brain/CNS tumours
Adrencortical carcinoma
Acute luekemia
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15
Q

What are the modes of inheritance for multi-system disorders?

A
Any possible
eg -
Chromosomal
Single gene
Poly gene
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16
Q

What are some important multi-system disorders?

A
NF1
	Myotonic dystrophy
	Tuberous clerosis
	CF
	Downs
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17
Q

How do disorders cause mlti-system involvement?

A
As several (or just one) gene with diverse functions are involved
This can be widely expressed in different tissues
>However expression in tissues can be different
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18
Q

What are the mechanisms of adult onset genetic disease?

A

Single gene
Chromosomal
Mitochondrial
Multifactorial

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19
Q

What are some common problems in multi-system disease?

A

Variable expression within + between families
Present to a large number of specialists
FH easily missed

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20
Q

What gene pattern is neurofibromatosis type 1 (NF1)?

A

Autosomal dominant

17q tumour supressor gene affected

21
Q

What is the diagnostic criteria for NF1 (neurofibromatosis type 1)?

A
2+ of:
café au lait spots - 6 or more
neurofibromas - 2 or more
axillary freckling
Lisch nodules (specks in iris) 
optic glioma
thinning of long bone cortex
family history
22
Q

What other features can accompany NF1?

A
Macrocephaly
Short sature
Dysmorphic features
Learning difficulties
Epilepsy
Scoliosis
Raised BP
Neoplasia
23
Q

How do you manage NF1?

A
Annual review of affected individuals + at risk children until diagnosis excluded
Check for:
BP
Spine for scoliosis
Tibia for unusua angulation
Visual acuity/fields
Educational assesment
24
Q

What are the main features of NF2?

A

Acoustic neuromas (often bilateral)
CNS + spinal tumours
A few CAL spots

25
WHat chromosome is NF2 found on?
Chromosome 22
26
What is tuberous sclerosis?
An autosomal dominant disease with a triad of: Epilepsy Learning difficulty Skin lesions
27
What is the penetrance of tuberous sclerosis?
Almost full penetrance
28
What genes cause TS?
TSC1 | TSC2
29
What are the clinical features of TS?
``` Has variable expression Learning difficulty common Seizures common - infantile spasms, myoclonic seizures Skin lesions Kidney cysts Phakomas in eyes Rhabdomyomas in heart ```
30
What are the skin lesions in TS?
``` depigmented macules angiofibromas fibrous plaque forehead shagreen patches ungual fibromas ```
31
How do you screen relatives for TS?
Cranial MR scan Renal USS Echocardiogram Clinical examination
32
What is myotonic dystophy?
An autosomal dominant disease | Increases in severity with each generation
33
What are the main symptoms of myotonic dystrophy?
``` Bilateral late-onset cataract Muscles weakness, stiffness + myotonia Low motivation Heart block Congneitcal motonic dystrophy - can lead to death ```
34
Why is risk estimation more difficult in multifacotrial conditions?
Often polygenic component interacting with environmental factors Penetrance may vary >Even if risk allele determined may no have disease
35
What is penetrance?
The chance of having a genetic disease if you have the genes responsibile for it
36
What is the mean age of onset for amyotophic lateral sclerosis?
55years (can be younger in familial forms)
37
What are the clinical features of ALS?
``` Progressive muscle weakness, wasting + increasing reflexes >Upper + lower motor signs Limb + bulbar muscle involvements Pure motor signs with fasiculations Cognition spared Death eventually due to resp failure ```
38
What is the only identified gene that causes ALS (accounts for only 2% of cases)?
Copper/zinc superoxide dismutase (SOD) mutations
39
Where are SOD 1, 2 and 3 located?
SOD1 in cytoplasm SOD2 in mitochondria (manganese) SOD3 in extracellular
40
What chromosomes are SOD genes located?
21 6 4
41
What is the function of SOD?
``` Protects cells from free radical damage As well as protecting from DNA damage, Ionising radiation damage Protein denaturation Lipid peroxidation ```
42
What is the penetrance of ALS?
Incomplete
43
What is the prognosis of ALS?
As there is no cure or satisfactory treatment, pretty poor
44
What are the symptoms of Huntington's?
``` Poor planning + memory Subcortical dementia Not classical dementia Personality changes Psychiatric disease - depression, paranoia, psychosis ```
45
When does huntingtons present?
Onset late 30s-40s but variable
46
What is the penetration of Huntingtons?
Fully penetrant
47
What are the disadvantages of predictive testing (positive outcome)?
``` Removes hope Continues uncertainty (when, not if) Known risk to offspring Impact on self/family/friends Potential problems with insurance/mortgage ```
48
What are the disadvantages of predictive testing if negative result?
Survivour guilt | Expectations of a "good" result
49
Do you test children for Huntingtons?
No. As only 25% of people choose to be tested overall, testing a child would take away their right to not know if that was their wish