ccch 7 Flashcards

(75 cards)

1
Q

Mutation

A

changes in the nucleotide sequence of DNA

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2
Q

spontaneous mutation

A

natural, rep errors, reactive oxygen from metabolism

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3
Q

induced mutation

A

any chemical or physical agent that causes hella mutations

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4
Q

mutations importance

A
  1. genetic variation
  2. advantage consequences
  3. important tools for understanding genes
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5
Q

point mutations

A

single nucleotide alterations, (nucleotide substitution)

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6
Q

bigger mutations

A

trinuclotide repeats, insertions, deletions, chromo rearrangement

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7
Q

mutation hotspot

A

places that are more likely to mutate

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8
Q

transition mutation

A

pyrimidine/purine replace with like

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9
Q

transversion

A

purine replace with pyrimidine, or vise versa

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10
Q

post mutations become permanent if

A

its replicate into a DNA sequence (not repaired)

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11
Q

types of mutations

A

silent mutation, missense mutation, nonsense mutation

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12
Q

missense mutation

A

amino acid swapped for another

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13
Q

nonsense mutaiton

A

amino acid to stop codon

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14
Q

sickle cell is caused by

A

missense mutation, A to T (tranvsersion)

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15
Q

insertions and deletions

A

leads to adding/subtraction amino acids, frameshift

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16
Q

cystic fibrosis is caused by

A

deletion mutation, CFTR cannel mutation

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17
Q

frame shift

A

insertion or deletion causing the shift in a frame, usually harmful

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18
Q

RTH thyroid hormone sensitivity

A

caused by frameshift, goiter, abnormal psychology

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19
Q

mutation need to be in - to have an effect

A

gene coding region or area important to it, needs to not be silent

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20
Q

trinucelotide repeats, most common

A

CGG, CAG, GAA
usually make triple helix, neurological disorders

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21
Q

fragile x and Huntingtons is caused by

A

trinucleotide repeats

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22
Q

repeats caused by

A

unequal cross over, slipping during DNA replication

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23
Q

unequal crossing over

A

one is short and other is longer

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24
Q

slipping durring DNA rep

A

forms a slipped structure during replication

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25
mutagen DNA damage
single base changes, structural distortion , DNA backbone damage
26
single base changes cause (what types of mutations)
single base conversion, alkylation, oxidation, minor effect of structure
27
deamination
mutagenic single base change, most frequent, hydrolytic, C to U is common
28
alkylation
adds methyl groups, nitrosamines GC to AT
29
oxidation
gains oxygen bond, radiation GC to TA
30
structural distortion
UV radiation causes Tymine dimers, creates backbone bulge and fucks everything up
31
DNA adduct (structural)
DNA binds to cancer causing things, structural distortion caused by intercalating agents and base analogs
32
ethidium bromide (structural)
carcinogen, intercalating agent, insert bn DNA bases
33
5 bromouracil (structural)
thymine analogue, mispair with guanine
34
Formation of abasic site
backbone damage, loss of base from nucleotide
35
dsDNA break
worst, ionizing radiation and chem compounds causes this
36
cellular responses to DNA damage
Damage bypass, damage reversal, damage removal and replacement
37
translation synthesis
allows bypass damage (t-t) with error prone polymerases,
38
Error pro DNA poly provides
trade off bn death or high mutation rate
39
polymerase switching
replacement of high fidelity poly for a low error prone one to bypass damaged DNA
40
DNA poly eta
translesin synthesis past TT dimer by inserting AA, has extra wide active site
41
prokaryote lesion Bypass needs the
SOS response
42
direct repair
correct dna damage with specific steps
43
pro of direct repairs
specific damage repaired accurately
44
con of direct repair
bad from evolutionary standpoint, needs specific enzyme
45
direct reversal examples
DNA photolyase, dna methyltransferase, SPRTN
46
DNA photolyase
uses UV from blue light break the covalent bonds holding two pyrimidines
47
dna methyltransferase
takes the methyl group and moves it
48
SPRTN protease
removes DNA protein cross links during synthesis, controlled by ubiquitin
49
single base change repair
base excision repair, mismatch repair
50
structural distortion repair
nucleotide excision repair
51
base excision repair requires
requires DNA glycosylases (cuts base off sugar), leaves a basic cite, can be short patch or long patch
52
short patch repair
lyase cuts strand on 3' end, APE1 removes the phosphoriboes, poly adds new nucleotide, ligase seals backbone
53
long patch repair
APE1 cuts strand form 5' end, poly delta or eta displaces a short old strand and synthesizes new dna, FEN1clips flap of DNA, ligase seals backbone
54
mismatch repair
errors during replication, removes larges section of DNA, repairs polymerase errors, MUT proteins
55
nucleotide excision repair
longer structural distortion repair ex t-t dimer can cut up to 30 nucleotides XP proteins
56
xp protiens
human nucleotide excision repair portein
57
global genome repair
ids lesions in the whole genome
58
transcription coupled repair
ids lesion in the transcribed strand of active genes
59
nucleotide excision repair subtypes
global genome and transcription coupled
60
xeroderma pigmentosum
mutations in the nucleotide excision repair proteins sensitive to the sun restive mutation
61
double stranded DNA breaks repair mechs
homologous recombinant repair (accurate) non homologous end joining (not as accurate)
62
homologous recombinationand what complex is used for it
gets genetic info form an undamaged homo chromosome, MRN complex
63
nonhomo end joining
direct ligation of ends all willy nilly doesn't have to be from same chromie huge trade off to take care of lethal breaks, XU protein 70/80
64
heteroduplex DNA
duplex DNA formed during recombination composed of single DNA strands originally form different homologs
65
Holliday Junction
recombination intermediate where 2 recombining duplex are joined covalently by single strand crossovers
66
resolvsome
resolved Holliday junctions
67
nonhomo end joining leads too
mutations
68
nonhomo end joining proteins
KU 70/80 dimers, recognize the ends
69
germ line mutations unrepaird
(germ cells) passed to next generation natural selection
70
somatic mutations unrepaired
not transmitted, may lead to cancer, can effect survival rate
71
sanger sequencing
synthesize complementary DNA in vitro with Nucleotide homologues that terminate the chain
72
translation synthesis proteins
DNA poly IV and V (bacteria), DNA polymerase eta, humans
73
MSH protein
recognized damage in 5' excision of mismatch repair
74
MLH/PMS protein
endonuclease activity, activates at PCNA, 3' excision, mismatch repair
75
BRCA 1, BRCA 2
dsDNA recombin proteins