Biochemistry - Metabolism Flashcards

(62 cards)

1
Q

Metabolism sites

  • Mitochondria
  • Cytoplasm
  • Both
A
  • Mitochondria
    • Fatty acid oxidation (β-oxidation), acetyl- CoA production, TCA cycle, oxidative phosphorylation.
  • Cytoplasm
    • Glycolysis, fatty acid synthesis, HMP shunt, protein synthesis (RER), steroid synthesis (SER), cholesterol synthesis.
  • Both
    • Heme synthesis, Urea cycle, Gluconeogenesis.
    • HUGs take two (i.e., both).
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2
Q

Enzyme terminology

  • Kinase
  • Phosphorylase
  • Phosphatase
  • Dehydrogenase
  • Hydroxylase
  • Carboxylase
  • Mutase
  • Glucokinase
A
  • Kinase
    • Uses ATP to add high-energy phosphate group onto substrate (e.g., phosphofructokinase).
  • Phosphorylase
    • Adds inorganic phosphate onto substrate without using ATP (e.g., glycogen phosphorylase).
  • Phosphatase
    • Removes phosphate group from substrate (e.g., fructose-1,6-bisphosphatase).
  • Dehydrogenase
    • Catalyzes oxidation-reduction reactions (e.g., pyruvate dehydrogenase).
  • Hydroxylase
    • Adds hydroxyl group (-OH) onto substrate (e.g., tyrosine hydroxylase).
  • Carboxylase
    • Transfers CO2 groups with the help of biotin (e.g., pyruvate carboxylase).
  • Mutase
    • Relocates a functional group within a molecule (e.g., vitamin B12–dependent methylmalonyl-CoA mutase).
  • Glucokinase
    • An enzyme that catalyzes the phosphorylation of glucose using a molecule of ATP.
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3
Q

Rate-determining enzymes of metabolic processes

  • For each
    • Enzyme
      • regulators
      • regulators
  • Glycolysis
  • Gluconeogenesis
  • TCA cycle
  • Glycogenesis
  • Glycogenolysis
  • HMP shunt
  • De novo pyrimidine synthesis
  • De novo purine synthesis
  • Urea cycle
  • Fatty acid synthesis
  • Fatty acid oxidation
  • Ketogenesis
  • Cholesterol synthesis
A
  • Glycolysis
    • Phosphofructokinase-1 (PFK-1)
    • +: AMP, fructose-2,6-bisphosphate
    • -: ATP, citrate
  • Gluconeogenesis
    • Fructose-1,6-bisphosphatase
    • +: ATP, acetyl-CoA
    • -: AMP, fructose-2,6-bisphosphate
  • TCA cycle
    • Isocitrate dehydrogenase
    • +: ADP
    • -: ATP, NADH
  • Glycogenesis
    • Glycogen synthase
    • +: Glucose-6-phosphate, insulin, cortisol
    • -: Epinephrine, glucagon
  • Glycogenolysis
    • Glycogen phosphorylase
    • +: Epinephrine, glucagon, AMP
    • -: Glucose-6-phosphate, insulin, ATP
  • HMP shunt
    • Glucose-6-phosphate dehydrogenase (G6PD)
    • +: NADP+
    • -: NADPH
  • De novo pyrimidine synthesis
    • Carbamoyl phosphate synthetase II
  • De novo purine synthesis
    • Glutamine-phosphoribosylpyrophosphate (PRPP) amidotransferase
    • -: AMP, inosine monophosphate (IMP), GMP
  • Urea cycle
    • Carbamoyl phosphate synthetase I
    • +: N-acetylglutamate
  • Fatty acid synthesis
    • Acetyl-CoA carboxylase (ACC)
    • +: Insulin, citrate
    • -: Glucagon, palmitoyl-CoA
  • Fatty acid oxidation
    • Carnitine acyltransferase I
    • -: Malonyl-CoA
  • Ketogenesis
    • HMG-CoA synthase
  • Cholesterol synthesis
    • HMG-CoA reductase
    • +: Insulin, thyroxine
    • -: Glucagon, cholesterol
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4
Q

Summary of pathways (100)

A
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5
Q

ATP production

  • Aerobic vs. anaerobic
  • ATP hydrolysis
  • Arsenic
A
  • Aerobic vs. anaerobic
    • Aerobic metabolism of glucose produces…
      • 32 net ATP via malate-aspartate shuttle (heart and liver)
      • 30 net ATP via glycerol-3-phosphate shuttle (muscle).
    • Anaerobic glycolysis produces only 2 net ATP per glucose molecule.
  • ATP hydrolysis
    • Can be coupled to energetically unfavorable reactions.
  • Arsenic
    • Causes glycolysis to produce zero net ATP.
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6
Q

What is carried in activated forms by these carrier molecules

  • ATP
  • NADH, NADPH, FADH2
  • CoA, lipoamide
  • Biotin
  • Tetrahydrofolates
  • SAM
  • TPP
A
  • ATP
    • Phosphoryl groups
  • NADH, NADPH, FADH2
    • Electrons
  • CoA, lipoamide
    • Acyl groups
  • Biotin
    • CO2
  • Tetrahydrofolates
    • 1-carbon units
  • SAM
    • CH3 groups
  • TPP
    • Aldehydes
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7
Q

Universal electron acceptors

  • Universal electron acceptors
  • NAD+
  • NADPH
A
  • Universal electron acceptors
    • Nicotinamides (NAD+ from vitamin B3, NADP+)
    • Flavin nucleotides (FAD+ from vitamin B2).
  • NAD+
    • Generally used in catabolic processes to carry reducing equivalents away as NADH.
  • NADPH
    • Used in anabolic processes (steroid and fatty acid synthesis) as a supply of reducing equivalents.
    • A product of the HMP shunt.
    • Used in:
      • Anabolic processes
      • Respiratory burst
      • Cytochrome P-450 system
      • Glutathione reductase
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8
Q

Hexokinase vs. glucokinase

  • Phosphorylation of glucose
  • Low vs. high concentrations
  • Hexokinase vs. glucokinase
    • Location
    • Km
    • Vmax
    • Induced by insulin?
    • Feedback-inhibited by glucose-6-P?
    • Gene mutation associated with maturity-onset diabetes of the young (MODY)?
A
  • Phosphorylation of glucose
    • Phosphorylation of glucose to yield glucose-6-P
      • 1st step of glycolysis
      • 1st step of glycogen synthesis in the liver
    • Reaction is catalyzed by either hexokinase or glucokinase, depending on the tissue.
  • Low vs. high concentrations
    • At low glucose concentrations, hexokinase sequesters glucose in the tissue.
    • At high glucose concentrations, excess glucose is stored in the liver.
  • Hexokinase vs. glucokinase
    • Location
      • H: Most tissues, but not liver nor β cells of pancreas
      • G: Liver, β cells of pancreas
    • Km
      • H: Lower (increased affinity)
      • G: Higher (decreased affinity)
    • Vmax
      • H: Lower (decreased capacity)
      • G: Higher (increased capacity)
    • Induced by insulin?
      • H: No
      • G: Yes
    • Feedback-inhibited by glucose-6-P?
      • H: Yes
      • G: No
    • Gene mutation associated with maturity-onset diabetes of the young (MODY)?
      • H: No
      • G: Yes
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9
Q

Glycolysis regulation, key enzymes

  • Net glycolysis
  • Require ATP
  • Produce ATP
A
  • Net glycolysis (cytoplasm):
    • Glucose + 2 Pi + 2 ADP + 2 NAD+ Ž–> 2 pyruvate + 2 ATP + 2 NADH + 2 H+ + 2 H2O.
    • Equation not balanced chemically, and exact balanced equation depends on ionization state of reactants and products.
  • Require ATP
    • Glucose –> [Hexokinase / Glucokinase] –> Glucose-6-phosphate
      • Glucose-6-P (-) hexokinase.
      • Glucokinase in liver and β cells of pancreas
      • Hexokinase in all other tissues
    • Fructose-6-P –> [Phosphofructokinase-1, rate-limiting step] –> Fructose-1,6-BP
      • Fructose-6-P (-) glucokinase.
    • ATP (-), AMP (+), citrate (-), fructose-2,6-BP (+).
  • Produce ATP
    • 1,3-BPG <– [Phosphoglycerate kinase] –> 3-PG
    • Phosphoenolpyruvate –> [Pyruvate kinase] –> Pyruvate
    • ATP (-), alanine (-), fructose-1,6-BP (+).
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10
Q

Regulation by F2,6BP

  • FBPase-2 and PFK-2
  • Fasting state
  • Fed state
A
  • FBPase-2 and PFK-2
    • FBPase-2 and PFK-2 are the same bifunctional enzyme whose function is reversed by phosphorylation by protein kinase A.
  • Fasting state
    • Increased glucagon Ž–> increased cAMP Ž–> increased protein kinase A –> increased FBPase-2, decreased PFK-2, less glycolysis, more gluconeogenesis.
  • Fed state
    • Increased insulin –> decreased cAMP Ž–> decreased protein kinase A Ž–> decreased FBPase-2, increased PFK-2, more glycolysis, less gluconeogenesis.
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11
Q

Pyruvate dehydrogenase complex

  • Complex
  • Regulation
  • Reaction
  • The complex contains 3 enzymes that require 5 cofactors:
  • Activated by…
  • The complex is similar to…
  • Arsenic
A
  • Complex
    • Mitochondrial enzyme complex linking glycolysis and TCA cycle.
  • Regulation
    • Differentially regulated in fed/fasting states (active in fed state).
  • Reaction
    • Pyruvate + NAD+ + CoA Ž–> acetyl-CoA + CO2 + NADH.
  • The complex contains 3 enzymes that require 5 cofactors:
    1. Pyrophosphate (B1, thiamine; TPP)
    2. FAD (B2, riboflavin)
    3. NAD (B3, niacin)
    4. CoA (B5, pantothenate)
    5. Lipoic acid
  • Activated by exercise, which:
    • Increases NAD+/NADH ratio
    • Increases ADP
    • Increases Ca2+
  • The complex is similar to…
    • The α-ketoglutarate dehydrogenase complex (same cofactors, similar substrate and action), which converts α-ketoglutarate –>Ž succinyl-CoA (TCA cycle).
  • Arsenic
    • Inhibits lipoic acid.
    • Findings: vomiting, rice-water stools, garlic breath.
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12
Q

Pyruvate dehydrogenase complex deficiency

  • Causes…
  • Findings
  • Treatment
A
  • Causes…
    • A buildup of pyruvate that gets shunted to lactate (via LDH) and alanine (via ALT).
    • Lysine and Leucine—the onLy pureLy ketogenic amino acids.
  • Findings
    • Neurologic defects, lactic acidosis, increased serum alanine starting in infancy.
  • Treatment
    • Increased intake of ketogenic nutrients (e.g., high fat content or increased lysine and leucine).
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13
Q

Pyruvate metabolism:
Functions of different pyruvate metabolic pathways (and their associated cofactors)

  • Alanine aminotransferase
  • Pyruvate carboxylase
  • Pyruvate dehydrogenase
  • Lactic acid dehydrogenase
A
  1. Alanine aminotransferase (B6):
    • Alanine carries amino groups to the liver from muscle
  2. Pyruvate carboxylase (biotin):
    • Oxaloacetate can replenish TCA cycle or be used in gluconeogenesis
  3. Pyruvate dehydrogenase (B1, B2, B3, B5, lipoic acid):
    • Transition from glycolysis to the TCA cycle
  4. Lactic acid dehydrogenase (B3):
    • End of anaerobic glycolysis
    • Major pathway in RBCs, leukocytes, kidney medulla, lens, testes, and cornea
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14
Q

TCA cycle (Krebs cycle)

  • Reactions
  • End results
  • Location
  • α-ketoglutarate and pyruvate dehydrogenase complexes
A
  • Reactions
    • Pyruvate Ž–> acetyl-CoA produces 1 NADH, 1 CO2.
    • Citrate Is Krebs’ Starting Substrate For Making Oxaloacetate.
      • Citrate
      • Isocitrate
      • KG
      • Succinyl-CoA
      • Succinate
      • Fumarate
      • Malate
      • Oxaloacetate
  • End results
    • The TCA cycle produces 3 NADH, 1 FADH2, 2 CO2, 1 GTP per acetyl-CoA = 10 ATP/ acetyl-CoA (2× everything per glucose).
  • Location
    • TCA cycle reactions occur in the mitochondria.
  • α-ketoglutarate and pyruvate dehydrogenase complexes
    • α-ketoglutarate dehydrogenase complex requires the same cofactors as the pyruvate dehydrogenase complex (B1, B2, B3, B5, lipoic acid).
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15
Q

Electron transport chain and oxidative phosphorylation (104)

  • ETC
  • ATP produced via ATP synthase
    • 1 NADH –>
    • 1 FADH2 –>
  • Oxidative phosphorylation poisons
    • Electron transport inhibitors
    • ATP synthase inhibitors
    • Uncoupling agents 
A
  • ETC
    • NADH electrons from glycolysis enter mitochondria via the malate-aspartate or glycerol-3- phosphate shuttle.
    • FADH2 electrons are transferred to complex II (at a lower energy level than NADH).
    • The passage of electrons results in the formation of a proton gradient that, coupled to oxidative phosphorylation, drives the production of ATP.
  • ATP produced via ATP synthase
    • 1 NADH Ž–> 2.5 ATP
    • 1 FADH2 –> 1.5 ATP.
  • Oxidative phosphorylation poisons
    • Electron transport inhibitors
      • Directly inhibit electron transport, causing a decreased proton gradient and block of ATP synthesis.
      • Rotenone, cyanide, antimycin A, CO.
    • ATP synthase inhibitors
      • Directly inhibit mitochondrial ATP synthase, causing an increased proton gradient.
      • No ATP is produced because electron transport stops.
      • Oligomycin.
    • Uncoupling agents 
      • Increased permeability of membrane, causing a decreased proton gradient and increased O2 consumption.
      • ATP synthesis stops, but electron transport continues.
      • Produces heat.
      • 2,4-Dinitrophenol (used illicitly for weight loss), aspirin (fevers often occur after aspirin overdose), thermogenin in brown fat.
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16
Q

Gluconeogenesis and irreversible enzymes

  • Gluconeogenesis
    • Function
    • Location
    • Deficiency of the key gluconeogenic enzymes…
    • Odd- vs. even-chain fatty acids
  • Irreversible enzymes
A
  • Gluconeogenesis
    • Function
      • Serves to maintain euglycemia during fasting.
    • Location
      • Occurs primarily in liver
      • Enzymes also found in kidney, intestinal epithelium.
        • Muscle cannot participate in gluconeogenesis because it lacks glucose-6-phosphatase.
    • Deficiency of the key gluconeogenic enzymes…
      • Causes hypoglycemia.
    • Odd- vs. even-chain fatty acids
      • Odd-chain fatty acids yield 1 propionyl-CoA during metabolism, which can enter the TCA cycle (as succinyl-CoA), undergo gluconeogenesis, and serve as a glucose source.
      • Even-chain fatty acids cannot produce new glucose, since they yield only acetyl-CoA equivalents.
  • Irreversible enzymes (Pathway Produces Fresh Glucose)
    • Pyruvate carboxylase
      • In mitochondria.
      • Pyruvate –>Ž oxaloacetate.
      • Requires biotin, ATP.
      • Activated by acetyl-CoA.
    • Phosphoenolpyruvate carboxykinase
      • In cytosol.
      • Oxaloacetate –>Ž phosphoenolpyruvate.
      • Requires GTP.
    • Fructose-1,6-bisphosphatase
      • In cytosol.
      • Fructose-1,6-BP –>Ž fructose-6-P.
      • Citrate (+), fructose 2,6-bisphosphate (-).
    • Glucose-6-phosphatase
      • In ER.
      • Glucose-6-P Ž–> glucose.
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17
Q

HMP shunt (pentose phosphate pathway)

  • Function
  • Sites
  • 2 distinct phases
A
  • Function
    • Provides a source of NADPH from abundantly available glucose-6-P
      • NADPH is required for reductive reactions, e.g., glutathione reduction inside RBCs, fatty acid and cholesterol biosynthesis
    • Additionally, this pathway yields ribose for nucleotide synthesis and glycolytic intermediates.
    • No ATP is used or produced.
  • Sites
    • Lactating mammary glands, liver, adrenal cortex (sites of fatty acid or steroid synthesis), RBCs.
  • 2 distinct phases (oxidative and nonoxidative), both of which occur in the cytoplasm.
    • Oxidative (irreversible)
      • Glucose-6-Pi –> [Glucose-6-P dehydrogenase, rate-limiting step] –> CO2 + 2 NADPH + Ribulose-5-Pi
      • (+) NADP+, (-) NADPH
    • Nonoxidative (reversible)
      • Ribulose-5-Pi <– [Phosphopentose isomerase, transketolases] –> Ribose-6-Pi + G3P + F6P
      • Requires B1
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18
Q

Respiratory burst (oxidative burst) (105)

  • Functions
  • Chronic granulomatous disease (CGD)
  • Pyocyanin
  • Lactoferrin
A
  • Functions
    • Involves the activation of the phagocyte NADPH oxidase complex (e.g., in neutrophils, monocytes), which utilizes O2 as a substrate.
    • Plays an important role in the immune response –>Ž rapid release of reactive oxygen species (ROS).
    • Note that NADPH plays a role in both the creation and neutralization of ROS.
    • Myeloperoxidase is a blue-green heme-containing pigment that gives sputum its color.
  • Chronic granulomatous disease (CGD)
    • Phagocytes of patients with CGD can utilize H2O2 generated by invading organisms and convert it to ROS.
    • Patients are at increased risk for infection by catalase (+) species (e.g., S. aureus, Aspergillus) capable of neutralizing their own H2O2, leaving phagocytes without ROS for fighting infections.
  • Pyocyanin
    • Pyocyanin of P. aeruginosa functions to generate ROS to kill competing microbes.
  • Lactoferrin
    • A protein found in secretory fluids and neutrophils that inhibits microbial growth via iron chelation.
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19
Q

Glucose-6-phosphate dehydrogenase deficiency (106)

  • Definition
  • NADPH
  • Blood smear
A
  • Definition
    • X-linked recessive disorder.
    • Most common human enzyme deficiency.
    • More prevalent among blacks. 
    • Increased malarial resistance.
  • NADPH
    • NADPH is necessary to keep glutathione reduced, which in turn detoxifies free radicals and peroxides.
    • Decreased NADPH in RBCs leads to hemolytic anemia due to poor RBC defense against oxidizing agents (e.g., fava beans, sulfonamides, primaquine, antituberculosis drugs).
    • Infection can also precipitate hemolysis (free radicals generated via inflammatory response can diffuse into RBCs and cause oxidative damage).
  • Blood smear (Bite into some Heinz ketchup)
    • Heinz bodies—oxidized Hemoglobin precipitated within RBCs.
    • Bite cells—result from the phagocytic removal of Heinz bodies by splenic macrophages.
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20
Q

Essential fructosuria

  • Definition
  • Symptoms
A
  • Definition
    • Involves a defect in fructokinase.
    • Autosomal recessive.
    • A benign, asymptomatic condition, since fructose is not trapped in cells.
  • Symptoms
    • Fructose appears in blood and urine.
    • Disorders of fructose metabolism cause milder symptoms than analogous disorders of galactose metabolism.
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21
Q

Fructose intolerance

  • Definition
  • Diagnosis
  • Symptoms
  • Treatment
A
  • Definition
    • Hereditary deficiency of aldolase B.
    • Autosomal recessive.
    • Fructose-1-P accumulates, causing a decrease in available phosphate, which results in inhibition of glycogenolysis and gluconeogenesis.
    • Symptoms present following consumption of fruit, juice, or honey.
  • Diagnosis
    • Urine dipstick will be (-) (tests for glucose only)
    • Reducing sugar can be detected in the urine (nonspecific test for inborn errors of carbohydrate metabolism).
  • Symptoms
    • Hypoglycemia, jaundice, cirrhosis, vomiting.
  • Treatment
    • Decreased intake of both fructose and sucrose (glucose + fructose).
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22
Q

Galactokinase deficiency

  • Definition
  • Sympsoms
A
  • Definition
    • Hereditary deficiency of galactokinase.
      • Galactitol accumulates if galactose is present in diet.
    • Relatively mild condition.
    • Autosomal recessive.
  • Symptoms
    • Galactose appears in blood and urine, infantile cataracts.
    • May initially present as failure to track objects or to develop a social smile.
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23
Q

Classic galactosemia

  • Definition
  • Symptoms
  • Treatment
A
  • Definition
    • Absence of galactose-1-phosphate uridyltransferase.
    • Autosomal recessive.
    • Damage is caused by accumulation of toxic substances (including galactitol, which accumulates in the lens of the eye).
  • Symptoms
    • Failure to thrive, jaundice, hepatomegaly, infantile cataracts, intellectual disability.
    • The more serious defects lead to PO43- depletion.
    • Classic galactosemia can lead to E. coli sepsis in neonates.
  • Treatment
    • Exclude galactose and lactose (galactose + glucose) from diet.
  • Fructose is to Aldolase B as Galactose is to UridylTransferase (FAB GUT).
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24
Q

Sorbitol

  • Sorbitol production
  • Aldose reductase vs. sorbitol dehydrogenase in tissues
A
  • Sorbitol production
    • An alternative method of trapping glucose in the cell is to convert it to its alcohol counterpart, called sorbitol, via aldose reductase.
      • Some tissues then convert sorbitol to fructose using sorbitol dehydrogenase;
      • Tissues with an insufficient amount of this enzyme are at risk for intracellular sorbitol accumulation, causing osmotic damage (e.g., cataracts, retinopathy, and peripheral neuropathy seen with chronic hyperglycemia in diabetes).
    • High blood levels of galactose also result in conversion to the osmotically active galactitol via aldose reductase.
  • Aldose reductase vs. sorbitol dehydrogenase in tissues
    • Liver, ovaries, and seminal vesicles have both enzymes.
    • Schwann cells, retina, and kidneys have only aldose reductase.
      • Lens has primarily aldose reductase.
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25
Lactase deficiency * Definition * Primary * Secondary * Congenital * Diagnosis * Findings * Treatment
* Definition * Insufficient lactase enzyme Ž--\> dietary lactose intolerance. * Lactase functions on the brush border to digest lactose (in human and cow milk) into glucose and galactose. * Primary * Age-dependent decline after childhood (absence of lactase-persistent allele), common in people of Asian, African, or Native American descent. * Secondary * Loss of brush border due to gastroenteritis (e.g., rotavirus), autoimmune disease, etc. * Congenital * Rare, due to defective gene. * Diagnosis * Stool demonstrates decreased pH and breath shows increased hydrogen content with lactose tolerance test. * Intestinal biopsy reveals normal mucosa in patients with hereditary lactose intolerance. * Findings * Bloating, cramps, flatulence, osmotic diarrhea. * Treatment * Avoid dairy products or add lactase pills to diet * Lactose-free milk.
26
Amino acids * Form found in proteins * Essential * Definition * Glucogenic * Glucogenic/ketogenic * Ketogenic * Acidic * Basic
* Form found in proteins * Only L-form amino acids are found in proteins. * Essential * All essential amino acids need to be supplied in the diet. * _Glucogenic_: methionine (Met), valine (Val), histidine (His). * _Glucogenic/ketogenic_: isoleucine (Ile), phenylalanine (Phe), threonine (Thr), tryptophan (Trp). * _Ketogenic_: leucine (Leu), lysine (Lys). * Acidic * Aspartic acid (Asp) and glutamic acid (Glu). * Negatively charged at body pH. * Basic * Arginine (Arg), lysine (Lys), histidine (His). * Arg is most basic. * His has no charge at body pH. * Arg and His are required during periods of growth. * Arg and Lys are increased in histones, which bind negatively charged DNA.
27
Urea cycle
* Amino acid catabolism results in the formation of common metabolites (e.g., pyruvate, acetyl- CoA), which serve as metabolic fuels. * Excess nitrogen (NH3) generated by this process is converted to urea and excreted by the kidneys. * ****_O_**rdinarily, **_C_**areless **_C_**rappers **_A_**re **_A_**lso **_F_**rivolous **_A_**bout **_U_**rination.** * **​_O_**rnithine * **_C_**arbamoyl phosphate * **_C_**itrulline * **_A_**spartate * **_A_**rgininosuccinate * **_F_**umarate * **_A_**rginine * **_U_**rea
28
Transport of ammonia by alanine and glutamate (109)
29
Hyperammonemia * Definition * Treatment * Ammonia intoxication
* Definition * Can be acquired (e.g., liver disease) or hereditary (e.g., urea cycle enzyme deficiencies). * Results in excess NH4+, which depletes α-ketoglutarate, leading to inhibition of TCA cycle. * Treatment * Limit protein in diet. * Benzoate or phenylbutyrate (both of which bind amino acid and lead to excretion) may be given to decreased ammonia levels. * Lactulose to acidify the GI tract and trap NH4+ for excretion. * **Ammonia intoxication** * Tremor (asterixis), slurring of speech, somnolence, vomiting, cerebral edema, blurring of vision.
30
N-acetylglutamate deficiency
* Required cofactor for carbamoyl phosphate synthetase I. * Absence of N-acetylglutamate --\>Ž hyperammonemia. * Presentation is identical to carbamoyl phosphate synthetase I deficiency. * However, increased ornithine with normal urea cycle enzymes suggests hereditary N-acetylglutamate deficiency.
31
Ornithine transcarbamylase deficiency * Definition * Findings
* Definition * Most common urea cycle disorder. * X-linked recessive (vs. other urea cycle enzyme deficiencies, which are autosomal recessive). * Interferes with the body’s ability to eliminate ammonia. * Often evident in the first few days of life, but may present with late onset. * Excess carbamoyl phosphate is converted to orotic acid (part of the pyrimidine synthesis pathway). * Findings * Increased orotic acid in blood and urine, decreased BUN, symptoms of hyperammonemia. * No megaloblastic anemia (vs. orotic aciduria).
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Amino acid derivatives * Phenylalanine * Tryptophan * Histidine * Glycine * Glutamate * Arginine
* Phenylalanine * --\> [BH4] --\> Tyrosine * --\> Thyroxine * --\> [BH4] --\> Dopa * --\> Melanin * --\> [B6] --\> Dopamine --\> [Vitamin C] --\> NE --\> [SAM] --\> Epi * Tryptophan * --\> [B6] --\> Niacin --\> NAD+ / NADP+ * --\> [BH4, B6] --\> Serotonin --\> Melatonin * Histidine * --\> [B6] --\> Histamine * Glycine * --\> [B6] --\> Porphyrin --\> Heme * Glutamate * --\> [B6] --\> GABA * --\> Glutathione * Arginine * --\> Creatine * --\> Urea * --\> [BH4] --\> Nitric oxide
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Catecholamine synthesis/tyrosine catabolism (110)
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Phenylketonuria * Definition * Findings * Treatment * Maternal PKU * Phenylketones
* Definition * Due to decreased phenylalanine hydroxylase or decreased tetrahydrobiopterin cofactor (malignant PKU). * Tyrosine becomes essential. * Increased phenylalanine leads to excess phenylketones in urine. * Autosomal recessive. * Incidence ≈ 1:10,000. * Screened for 2–3 days after birth (normal at birth because of maternal enzyme during fetal life). * Findings * Intellectual disability, growth retardation, seizures, fair skin, eczema, musty body odor. * Disorder of **aromatic **amino acid metabolism --\>Ž musty body **odor**. * Treatment * Decreased phenylalanine and increased tyrosine in diet. * PKU patients must avoid the artificial sweetener aspartame, which contains phenylalanine. * **Maternal PKU** * Lack of proper dietary therapy during pregnancy. * Findings in infant: microcephaly, intellectual disability, growth retardation, congenital heart defects. * Phenylketones * Phenylacetate, phenyllactate, and phenylpyruvate.
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Alkaptonuria (ochronosis) * Definition * Findings
* Definition * Congenital deficiency of homogentisate oxidase in the degradative pathway of tyrosine to fumarate. * Autosomal recessive. * Benign disease. * Findings * Dark connective tissue, brown pigmented sclerae, urine turns black on prolonged exposure to air. * May have debilitating arthralgias (homogentisic acid toxic to cartilage).
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Homocystinuria * Types * All forms result in... * Findings
* Types (all autosomal recessive): * Cystathionine synthase deficiency * Treatment: decrease methionine, increase cysteine, increase B12 and folate in diet * Decreased affinity of cystathionine synthase for pyridoxal phosphate * Treatment: really increased B6 and increased cysteine in diet * ƒƒHomocysteine methyltransferase (methionine synthase) deficiency * Treatment: increased methionine in diet * All forms result in excess homocysteine. * Findings * Really increased homocysteine in urine, intellectual disability, osteoporosis, tall stature, kyphosis, lens subluxation (downward and inward), thrombosis, and atherosclerosis (stroke and MI).
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Cystinuria * Definition * Diagnosis * Treatment
* Definition * Hereditary defect of renal PCT and intestinal amino acid transporter for **_C_**ysteine, **_O_**rnithine, **_L_**ysine, and **_A_**rginine (**_COLA_**). * Cystine is made of 2 cysteines connected by a disulfide bond. * Excess cystine in the urine can lead to precipitation of hexagonal cystine stones. * Autosomal recessive. * Common (1:7000). * Diagnosis * Urinary cyanide-nitroprusside test is diagnostic. * Treatment * Urinary alkalinization (e.g., potassium citrate, acetazolamide) and chelating agents increase solubility of cystine stones * Good hydration.
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Maple syrup urine disease * Definition * Findings * Treatment
* Definition * Blocked degradation of **_branched_** amino acids (**_I_**soleucine, **_L_**eucine, **_V_**aline) due to decreased α-ketoacid dehydrogenase (B1). * **_I_ **_L_**ove **_V_**ermont _maple syrup_ from maple trees (with _branches_).** * Autosomal recessive. * Findings * Causes increased α-ketoacids in the blood, especially those of leucine. * Causes severe CNS defects, intellectual disability, and death. * Urine smells like maple syrup/burnt sugar. * Treatment * Restriction of leucine, isoleucine, and valine in diet, and thiamine supplementation.
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Glycogen regulation by insulin and glucagon/epinephrine (112)
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Glycogen (113) * Glycogen * Skeletal muscle * Hepatocytes
* Glycogen * Branches have α-(1,6) bonds * Linkages have α-(1,4) bonds. * A small amount of glycogen is degraded in lysosomes by α-1,4-glucosidase (acid maltase). * Skeletal muscle * Glycogen undergoes glycogenolysis --\>Ž glucose-1-phosphate --\>Ž glucose-6-P, which is rapidly metabolized during exercise. * Hepatocytes * Glycogen is stored and undergoes glycogenolysis to maintain blood sugar at appropriate levels. * Glycogen phosphorylase cleaves glucose-1-P residues off branched glycogen until four remain before a branch point. * Then 4-α-d-glucanotransferase (debranching enzyme [5]) moves three glucose-1-Ps from the branch to the linkage. * Then α-1,6-glucosidase (debranching enzyme[6]V) cleaves off the last glucose-1-P on the branch. * “Limit dextrin” refers to the one to four residues remaining on a branch after glycogen phosphorylase has already shortened it.
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Glycogen vs. lysosomal storage diseases * Glycogen storage diseases * Lysosomal storage diseases
* Glycogen storage diseases * 12 types, all resulting in abnormal glycogen metabolism and an accumulation of glycogen within cells. * ****_V_**ery **_P_**oor **_C_**arbohydrate **_M_**etabolism.** * ​**_V_**on Gierke disease (type I) * **_P_**ompe disease (type II) * **_C_**ori disease (type III) * **_M_**cArdle disease (type V) * Lysosomal storage diseases * Each is caused by a deficiency in one of the many lysosomal enzymes. * Results in an accumulation of abnormal metabolic products. * Increased incidence of Tay-Sachs, Niemann-Pick, and some forms of Gaucher disease in Ashkenazi Jews.
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Von Gierke disease * Type * Findings * Deficient Enzyme * Treatment
* Type * Glycogen storage diseases (type I) * Autosomal recessive. * Findings * Severe fasting hypoglycemia, increased glycogen in liver, increased blood lactate, hepatomegaly * Deficient Enzyme * Glucose-6-phosphatase * Treatment * Frequent oral glucose/cornstarch; avoidance of fructose and galactose.
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Pompe disease * Type * Findings * Deficient Enzyme * Comments
* Type * Glycogen storage disease (type II) * Autosomal recessive. * Findings * Cardiomyopathy and systemic findings leading to early death * Deficient Enzyme * Lysosomal α-1,4-glucosidase (acid maltase) * Comments * **_P_**ompe trashes the **_P_**ump (heart, liver, and muscle).
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Cori disease * Type * Findings * Deficient Enzyme * Comments
* Type * Glycogen storage disease (type III) * Autosomal recessive. * Findings * Milder form of type I with normal blood lactate levels * Deficient Enzyme * Debranching enzyme (α-1,6-glucosidase) * Comments * Gluconeogenesis is intact.
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McArdle disease * Type * Findings * Deficient Enzyme * Comments
* Type * Glycogen storage disease (type V) * Autosomal recessive. * Findings * Increased glycogen in muscle, but cannot break it down, leading to painful muscle cramps, myoglobinuria (red urine) with strenuous exercise, and arrhythmia from electrolyte abnormalities. * Deficient Enzyme * Skeletal muscle glycogen phosphorylase (myophosphorylase) * Comments * **_M_**cArdle = **_M_**uscle.
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Fabry disease * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: sphingolipidose * Findings * Peripheral neuropathy of hands/feet, angiokeratomas, cardiovascular/renal disease * Deficient Enzyme * α-galactosidase A * Accumulated Substrate * Ceramide trihexoside * Inheritance * XR
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Gaucher disease * Type * Findings * Treatment * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: sphingolipidose * Findings * Most common. * Hepatosplenomegaly, pancytopenia, aseptic necrosis of femur, bone crises, Gaucher cells [A] (lipid-laden macrophages resembling crumpled tissue paper) * Treatment * Recombinant glucocerebrosidase. * Deficient Enzyme * Glucocerebrosidase (β-glucosidase) * Accumulated Substrate * Glucocerebroside * Inheritance * AR
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Niemann-Pick disease * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: sphingolipidose * **_No man picks_ (_Niemann-Pick_) his nose with his **_sphing_**er (**_sphing_**omyelinase).** * Findings * Progressive neurodegeneration, hepatosplenomegaly, “cherry-red” spot on macula, foam cells (lipidladen macrophages) [B] * Deficient Enzyme * Sphingomyelinase * Accumulated Substrate * Sphingomyelin * Inheritance * AR
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Tay-Sachs disease * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: sphingolipidose * Findings * Progressive neurodegeneration, developmental delay, “cherry-red” spot on macula [C], lysosomes with onion skin, no hepatosplenomegaly (vs. Niemann-Pick) * Deficient Enzyme * Hexosaminidase A * **Tay-Sa**_X_** lacks he**_X_**osaminidase.** * Accumulated Substrate * GM2 ganglioside * Inheritance * AR
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Krabbe disease * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: sphingolipidose * Findings * Peripheral neuropathy, developmental delay, optic atrophy, globoid cells * Deficient Enzyme * Galactocerebrosidase * Accumulated Substrate * Galactocerebroside, psychosine * Inheritance * AR
51
Metachromatic leukodystrophy * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: sphingolipidose * Findings * Central and peripheral demyelination with ataxia, dementia * Deficient Enzyme * Arylsulfatase A * Accumulated Substrate * Cerebroside sulfate * Inheritance * AR
52
Hurler syndrome * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: mucopolysaccharidose * Findings * Developmental delay, gargoylism, airway obstruction, corneal clouding, hepatosplenomegaly * Deficient Enzyme * α-L-iduronidase * Accumulated Substrate * Heparan sulfate, dermatan sulfate * Inheritance * AR
53
Hunter syndrome * Type * Findings * Deficient Enzyme * Accumulated Substrate * Inheritance
* Type * Lysosomal storage disease: mucopolysaccharidose * Findings * Mild Hurler + aggressive behavior, no corneal clouding * Deficient Enzyme * Iduronate sulfatase * Accumulated Substrate * Heparan sulfate, dermatan sulfate * Inheritance * XR * **_Hunters_ see _clearly_ (_no corneal clouding_) and aggressively aim for the _X_ (_X_-linked recessive).**
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Fatty acid metabolism * Long-chain fatty acid degradation requires... * Carnitine deficiency * Acyl-CoA dehydrogenase deficiency
* Long-chain fatty acid degradation requires... * Carnitine-dependent transport into the mitochondrial matrix. * ****_CAR_**nitine = **_CAR_**nage of fatty acids.** * **Carnitine deficiency** * Inability to transport LCFAs into the mitochondria, resulting in toxic accumulation. * Causes weakness, hypotonia, and hypoketotic hypoglycemia. * **Acyl-CoA dehydrogenase deficiency** * Increased dicarboxylic acids, decreased glucose and ketones. * Acetyl-CoA is a (+) allosteric regulator of pyruvate carboxylase in gluconeogenesis. * Decreased acetyl-CoA --\> decreased fasting glucose. * ​**“**_SY_**trate” = **_SY_**nthesis.**
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Ketone bodies * In the liver... * Other situations * In prolonged starvation and diabetic ketoacidosis... * In alcoholism... * Both processes cause... * Breath * Urine test for ketones
* In the liver... * Fatty acids and amino acids are metabolized to acetoacetate and β-hydroxybutyrate (to be used in muscle and brain). * Other situations * In prolonged starvation and diabetic ketoacidosis... * Oxaloacetate is depleted for gluconeogenesis. * In alcoholism... * Excess NADH shunts oxaloacetate to malate. * Both processes cause... * A buildup of acetyl-CoA, which shunts glucose and FFA toward the production of ketone bodies. * Breath * Smells like acetone (fruity odor). * Urine test for ketones * Does not detect β-hydroxybutyrate.
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Metabolic fuel use: Exercise
* 1 g protein or carbohydrate = 4 kcal. * 1 g fat = 9 kcal. * 1 g alcohol = 7 kcal.
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Metabolic fuel use: Fasting and starvation * Priorities * Fed state (after a meal) * Fasting (between meals) * Starvation days 1–3 * Starvation after day 3
* Priorities * Supply sufficient glucose to the brain and RBCs * Preserve protein. * Fed state (after a meal) * Glycolysis and aerobic respiration. * Insulin stimulates storage of lipids, proteins, glycogen. * Fasting (between meals) * Hepatic glycogenolysis (major) * Hepatic gluconeogenesis, adipose release of FFA (minor). * Glucagon, adrenaline stimulate use of fuel reserves. * Starvation days 1–3 * Blood glucose levels maintained by: * ƒƒHepatic glycogenolysis * Adipose release of FFA * ƒƒMuscle and liver, which shift fuel use from glucose to FFA * ƒƒHepatic gluconeogenesis from peripheral tissue lactate and alanine, and from adipose tissue glycerol and propionyl- CoA (from odd-chain FFA—the only triacylglycerol components that contribute to gluconeogenesis) * Glycogen reserves depleted after day 1. * RBCs lack mitochondria and so cannot use ketones. * Starvation after day 3 * Adipose stores (ketone bodies become the main source of energy for the brain). * After these are depleted, vital protein degradation accelerates, leading to organ failure and death. * Amount of excess stores determines survival time.
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Cholesterol synthesis
* Rate-limiting step is catalyzed by HMG-CoA reductase (induced by insulin), which converts HMG-CoA to mevalonate. * 2⁄3 of plasma cholesterol is esterified by lecithin-cholesterol acyltransferase (LCAT). * Statins (e.g., lovastatin) competitively and reversibly inhibit HMG-CoA reductase.
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Lipid transport, key enzymes * Pancreatic lipase * Lipoprotein lipase (LPL) * Hepatic TG lipase (HL) * Hormone-sensitive lipase * LCAT * Cholesterol ester transfer protein (CETP)
* Pancreatic lipase * Degradation of dietary triglycerides (TG) in small intestine. * Lipoprotein lipase (LPL) * Degradation of TG circulating in chylomicrons and VLDLs. * Found on vascular endothelial surface. * Hepatic TG lipase (HL) * Degradation of TG remaining in IDL. * Hormone-sensitive lipase * Degradation of TG stored in adipocytes. * LCAT * Catalyzes esterification of cholesterol. * Cholesterol ester transfer protein (CETP) * Mediates transfer of cholesterol esters to other lipoprotein particles.
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Major apolipoproteins * For each * Function * Chlyomicron and/or Chylomicron remnant? * VLDL and/or IDL and/or LDL and/or HDL? * E * A-I * C-II * B-48 * B-100
* E * _Function_: Mediates remnant uptake * Chylomicron & Chylomicron remnant * VLDL, IDL, & HDL * A-I * _Function_: Activates LCAT * Chylomicron * HDL * C-II * _Function_: Lipoprotein lipase cofactor * Chylomicron * VLDL & HDL * B-48 * _Function_: Mediates chylomicron secretion * Chylomicron & Chylomicron remnant * B-100 * _Function_: Binds LDL receptor * VLDL, IDL, & LDL
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Lipoprotein functions * Lipoproteins are composed of... * What carry most cholesterol * Chylomicron * VLDL * IDL * LDL * HDL
* Lipoproteins are composed of... * Varying proportions of cholesterol, TGs, and phospholipids. * What carry most cholesterol * LDL and HDL carry most cholesterol. * Chylomicron * Delivers dietary TGs to peripheral tissue. * Delivers cholesterol to liver in the form of chylomicron remnants, which are mostly depleted of their triacylglycerols. * Secreted by intestinal epithelial cells. * VLDL * Delivers hepatic TGs to peripheral tissue. * Secreted by liver. * IDL * Formed in the degradation of VLDL. * Delivers TGs and cholesterol to liver. * LDL * Delivers hepatic cholesterol from liver to peripheral tissues. * Formed by hepatic lipase modification of IDL in the peripheral tissue. * Taken up by target cells via receptor-mediated endocytosis. * ****_L_**DL is **_L_**ousy.** * HDL * Mediates reverse cholesterol transport from periphery to liver. * Acts as a repository for apoC and apoE (which are needed for chylomicron and VLDL metabolism). * Secreted from both liver and intestine. * Alcohol increases synthesis. * ****_H_**DL is **_H_**ealthy.**
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Familial dyslipidemias * For each * Type * Increased blood level * Pathophysiology * Hyper-chylomicronemia * Familial hyper-cholesterolemia * Hyper-triglyceridemia
* Hyper-chylomicronemia * Type I * Increased blood level * Chylomicrons, TG, cholesterol * Pathophysiology * Autosomal recessive. * Lipoprotein lipase deficiency or altered apolipoprotein C-II. * Causes pancreatitis, hepatosplenomegaly, and eruptive/pruritic xanthomas (no  risk for atherosclerosis). * Familial hyper-cholesterolemia * Type IIa * Increased blood level * LDL, cholesterol * Pathophysiology * Autosomal dominant. * Absent or defective LDL receptors. * Heterozygotes (1:500) have cholesterol ≈ 300 mg/dL * Homozygotes (very rare) have cholesterol ≈ 700+ mg/dL. * Causes accelerated atherosclerosis (may have MI before age 20), tendon (Achilles) xanthomas, and corneal arcus. * Hyper-triglyceridemia * Type IV * Increased blood level * VLDL, TG * Pathophysiology * Autosomal dominant. * Hepatic overproduction of VLDL. * Causes pancreatitis.