Lecture 6- Protein Folding I Flashcards Preview

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Flashcards in Lecture 6- Protein Folding I Deck (14):
1

Describe the different types of non-covalent interactions:

VdW- charges (e-) fluctuate around an atom, forming temporary dipole moments
electrostatic- charges on one atom interact with charges on another, as described by Coulomb's law
hydrogen bonding- partial charges from hydrogen interact with Nitrogen and Oxygen
short range repulsion-

2

Protein folding is a highly (random/cooperative) process

cooperative

3

Secondary structure plays an important part in the ____ of proteins.

compact folding

4

The conformation of a protein is the result of specific _____.

AA sequences

5

How does hydrophobicity act as a determinant of folding?

Hydrophobic AAs tend to "cluster together" in pockets of hydrophobicity (usually found within the plasma membrane)

6

Draw/describe the steps of protein folding.

1) Secondary structure is rapidly achieved (high E* state)
2) Format'n of hydrophobic domains (cooperative) leading to "core protein"
3) Formation of a molten globule
4) Adjustment of structure to native, low E* structure

7

The dynamic conformational state between native protein and full-unfolded protein

Molten globule

8

Why is the concept of the "molten globule" important?

The molten globule exists as the protein tries to find a low E*, highly ordered, thermodynamically stable structure

9

What two major types of interactions determine protein folding?

Non-covalent and hydrophobic interactions

10

Describe the characteristics of the "molten globule"

1) Presence of some 2* "native structure" elements - the beginnings of final form are taking shape
2) No specific 3* structure - no packing of side chains
3) Compact into the overall shape of the protein, but radius is still 10-30% larger than final native protein's radius
4) Loosely packed hydrophobic core

11

Repeating secondary structure present in many proteins that exhibit similar f(x)s

Domain

12

Structural charachteristics of a protein (ex: repeated alpha-helices)

motif

13

A specific functional region of a protein

domain (ex: antigen binding domain on an anti-body)

14

List the "non-covalent" interactions responsible for protein folding:

- van der Walls
- electrostatic interaction
- Hydrogen bonds
- short range repulsion