Lecture 12 - Phylogenetic Systematics Flashcards

1
Q

What is phylogeny?

A

the evolutionary history of a species or groups of related species

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2
Q

What is taxonomy?

A

the science of naming and classifying organisms

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3
Q

What is systematics?

A

scientific system for classifying organsims

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4
Q

What are phylogenetic systematics?

A

classification of organisms by their order of branching on an evolutionary tree

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5
Q

Who developed old-school taxonomy?

A

Carolus Linnaeus

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6
Q

What are the two parts for scientific naming?

A
  1. binomial nomenclature

2. hierarchical classification system

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7
Q

What has been added to the two part naming system?

A

Domain

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8
Q

What are the 7 levels of the hierarchical classification system?

A
(domain)
kingdom
phylum
class 
order
family
genus
species
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9
Q

Why have old-school Linnaean categories been criticized?

A

do not always form monophyletic groups

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10
Q

The class Reptilia is _______

A

paraphyletic

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11
Q

Invertebrates are ____

A

paraphyletic

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12
Q

Homeotherms are ________

A

polyphyletic

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13
Q

What is PhyloCode?

A

-proposed classification system

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14
Q

How does PhyloCode work?

A
  • only monophyletic groups would be recognized
  • most species names would remain unchanged
  • use traditional taxonomic ranks
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15
Q

What is a node?

A

where the lineages diverge

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16
Q

What are sister taxa?

A
  • most closely related groups

- groups of organisms that share an immediate common ancestor

17
Q

What is the basal taxon?

A

one that branches off the earliest

18
Q

What is polytomy?

A

an unresolved point of divergence

19
Q

What are branches rotated around?

20
Q

Phylogenies are inferred form ______ not _________

A

homologous characters not analogous characters

21
Q

What are homologous characters?

A

common ancestors

22
Q

What are analogous characters?

A

similar selective environments

23
Q

What are homoplasies?

A

analogous structures or molecular sequences that evolved interdependenty

24
Q

What is cladistics?

A

one approach to reconstructing phylogeny

25
Cladistics groups species into ______
clades
26
What are clades?
ancestor and all its descendents
27
What does cladistics focus on?
shared, derived characters
28
What principles does cladistics use?
1. parsimony | 2. maximum likelihood
29
What is outgroup comparison?
distinguishes between ancestral and derived characters
30
What is an outgroup?
species/group from an evolutionary lineage that is known to have diverged before the lineage that includes the species we are studying
31
What happens in maximum parsimony?
the best tree requires the fewest changes
32
What is maximum likelihood?
alternative approach to reconstructing phylogeny
33
What happens in maximum likelihood?
the best tree is the tree with the highest likelihood given certain rules about how DNA changes over time -more computationally intensive
34
What is a monophyletic group?
a common ancestor and all its descendents
35
What is a paraphyletic group?
a common ancestor and some of its descendants
36
What is a polyphyletic group?
a common ancestor is not present, but some descendants are
37
What is an example of real-world parsimony?
four chambered hearts in birds/mammals